Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1055 122 1e-22 seq2158 120 4e-22 >seq1055 Length=3912 Score = 122 bits (134), Expect = 1e-22 Identities = 365/557 (66%), Gaps = 15/557 (3%) Strand=Plus/Minus Query 106754 GGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 106813 || ||||| || | ||| | ||| || ||||| ||||||||||| | || ||| || Sbjct 2131 GGGCAGAATAGGGTCCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTC 2072 Query 106814 CACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 106872 ||||||| | |||||||| | ||| || | ||||| | || ||||| || | Sbjct 2071 CACAGGGCCAAGAAGAGATCACGGGCACGGA-CTTCTTCCTTTCCATGGTTCTTGCGGAG 2013 Query 106873 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------TAGA 106926 ||||||||||| | || ||| || ||||||||||| || |||| || | || Sbjct 2012 GTCAAGGAACTCAAAGACATCAGCATGCCATGGCTCCAGGTAGATAGCAAAGGCACCAGG 1953 Query 106927 TCCCTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 106985 | ||| | | ||||| || | ||||| | || ||| ||| || || ||||||| Sbjct 1952 ACGCTTGTTGCCGCCC----TGGTCGACATATCTGGCGGTGTTGTTGAACACACGAAGCA 1897 Query 106986 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA 107045 | || | ||| || | || || || || || ||| ||| |||| | | Sbjct 1896 TGGGTACAATTCCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGA 1837 Query 107046 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 107105 | |||| || | || ||||| || || ||||||||| ||||| | | | Sbjct 1836 TACGGTGGACGTTAAGGCCGATACCTCCGGCAGTCTTTGAGATCAAAGCACAGGTCTTCA 1777 Query 107106 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 107165 | || | |||||||| | ||| ||||||||| || | || |||||||| | || Sbjct 1776 GTGTGTCGTAGATACCTTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCA 1717 Query 107166 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA-CATACCT 107224 | ||||| || || || |||||||||||||| || | || || |||| || | Sbjct 1716 TTTGCGGCTGCGGGGTTCCGGCATTGAAGAGGGTGGGAGAGGCATGGGTGAAGTATTTC- 1658 Query 107225 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATG 107284 |||||||| | |||||| || | || |||| ||| || |||||||| |||| Sbjct 1657 TGGGACATGAGATTGTATGTTTCAATTACTTTCTCAACGTCCTCGCCGTGGATACCGACC 1598 Query 107285 GCCACACGCATAAACAT 107301 || || ||||| | ||| Sbjct 1597 GCAACTCGCATTATCAT 1581 Score = 120 bits (132), Expect = 4e-22 Identities = 676/1067 (63%), Gaps = 24/1067 (2%) Strand=Plus/Minus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 |||||||||||||| ||||||||||| || | ||||| || | |||||| | | Sbjct 3359 CGGAGATAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATACTGGTG 3300 Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709 | ||| ||| || || || || | | || | |||| |||||| |||||| Sbjct 3299 ATCTTTCCCATGGTCGGCTCTTTCAAGTGGATGTTGAGCGATTGAGACTGGTCGATGAAG 3240 Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCCACACTGTGC 105767 || || | || ||||| | || | | | | | || |||||||||| || Sbjct 3239 GCGCCTCGATCAGCGGCCATCTGAACAATAG--TACGTTGAGAAATTTCCCACACGGTCT 3182 Query 105768 GGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCT 105827 ||| ||| ||||||||| ||||||| | | ||| ||||| || ||||| || | Sbjct 3181 TGTACAGAGCCTTGATATCTGCTGGGATGTTAGGGATGTTTTGGATGGAACCACCGTCAG 3122 Query 105828 TGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAA--TCTTCTTGAGATCATTGAC 105885 || || | | |||||||| | |||||| || || | || || || || |||| Sbjct 3121 CGATGATACGGTTCTTCATATTGTCGGACCACAGGCCGAGGTCGACT--AGGTCTTTGAG 3064 Query 105886 GAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTC-TCAGATAGATGTTCG 105944 || | |||||| | ||||| || || || | | | || |||||||| | Sbjct 3063 AAGCCACGGGTTGACGACTTGGAACTCGCCAGCAAGTACACGGCGTGAG-TAGATGTTGG 3005 Query 105945 TCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATT-TGTGCGGTGGAGGCTGTTGGC 106003 ||||| ||||||||||| || || | |||||| | || |||| ||| |||||| Sbjct 3004 AGGTGTAAGGTTCAAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTGCTGGCAGTTGGC 2946 Query 106004 ATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACA 106063 || || || | | | |||||||| | ||| | | ||| | || ||| || Sbjct 2945 ATGGGCGCAAGTAGTAAGCTGTTACGGACACCGTGCTTGGAGATCTCAGCTTTAAGACCA 2886 Query 106064 TCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTG 106122 |||||||| || | | |||| | || |||| ||||||| ||||||| | || || Sbjct 2885 TCCCAGTCCCAGAGGTCGGTTGGCGTTACGTTCC-ACATATCGTATTGAAGGATACCCTG 2827 Query 106123 GGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCT 106182 || || ||||||||| | | || | ||| | | | | || | ||||| Sbjct 2826 AGAAACAGGGGAACCCTCATAGGAGGAGTATGGACCATCGACCTTGGCAAGCTCACACGA 2767 Query 106183 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 106242 || || | || || || | ||| || ||||| | | |||| ||||||||| Sbjct 2766 TGCGGTCAACGCAGCATGGTAAAGGGTCTCGAAGATTTGGGTGTTCAAAAGCTTGGCTTC 2707 Query 106243 ATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAA 106302 ||| || || | | || | || |||| || || || || || || | Sbjct 2706 GGGTGAGTCGAAGGGCAATCGAAGAGCGAGGAAAGCATCAGCAAGTCCCTGGACGCCGAC 2647 Query 106303 ACCAATAGGTCTGTGTCGCATATTAGACTT--TCGCGCAGTCTCAACGGGATAAAAATTT 106360 | |||| || | || || | ||| ||| ||| || ||||| || || || Sbjct 2646 AGCAATGGGACGATGACGGAAATTG--CTTCGTCGTGCCTCTTCAACCGGGTAGTGGTTC 2589 Query 106361 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 106420 | || |||| | ||| | ||| || ||| | || || | |||||| ||||| || Sbjct 2588 CCATCTATGATCCTGTTCAAGTTTCTGACAACGACCTGAGTAACTTCATGGAGTTTGCCA 2529 Query 106421 TAATCAAA---AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAA 106477 |||| | | |||| | ||| ||| | | ||||||||||| |||||||| Sbjct 2528 AAATCGTATTCACCGCGAA---CAGCATCCACAAAGGTGGGAAGGGCGATAGATGCCAAG 2472 Query 106478 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAA 106537 |||||||| || |||||| | || || || | ||||| || || | || || Sbjct 2471 TTGCAAACTGCAACCTCATCTGGGGCGGTATATTCAACGATTTCAGTGCAAAGATTTGAG 2412 Query 106538 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGC 106597 || || || || | ||||| ||||| |||||| |||||| | ||||||||| ||| Sbjct 2411 CTACGGATAGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCAGGAATCCTTGTAAAGC 2352 Query 106598 ATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 || | || | || ||||||||||| | || ||||| || | ||| Sbjct 2351 ATAAAAGGGTTTCCAGTCTCCGTCTGGGCCTCAAGAATGGCGTACCA 2305 >seq2158 Length=8959 Score = 120 bits (132), Expect = 4e-22 Identities = 344/525 (66%), Gaps = 32/525 (6%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || ||||| |||||||| |||||||||||||| ||| ||||| || || |||||| Sbjct 1835 TAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGGGAGATATTGTCCATA 1894 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA--TGGGTGGCACCC----CAACTTGTTTGAGG 117099 ||||| || || || | | ||| | | | | ||| |||| ||| Sbjct 1895 AAGTCGAAGGGGTTGGTTGTGTTGTAGAACTTCTTATTACCAAGAGCAAC------GAGA 1948 Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159 || | ||| | || |||||||||||| |||| || || ||||| |||| || Sbjct 1949 AGCCTATCGGCGACGAACTCAATGTACTGACACATGAGCTTAGCATTCATGCCGAGAAGG 2008 Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 ||| ||||| || || | |||| | | ||| || || || || | | |||| Sbjct 2009 GCACAGGGGAGGGCATCAGTCAGGAACTCCTGCTCGATGGTGACTGCTTCAGTGATGATG 2068 Query 117220 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGA----AGAGCTC------ 117269 || | || ||| | |||| | || | ||| ||| |||| | Sbjct 2069 GCCTCGA------CGGCACTGGGGTCAGGGCG-ATAGT--TGAGGTGAGAGAACAGAAGG 2119 Query 117270 CACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAG 117329 || |||||| || ||| || || || || ||||| |||||||| || |||||| || Sbjct 2120 CA-GGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATAAGTTCGTTGGAGAAGGTGAG 2178 Query 117330 GCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAA 117389 || ||||||||||| |||||||| | ||| | || | | ||| || ||| |||||| Sbjct 2179 TCCGGGCATGAGACCACGCTTCTTTAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAA 2238 Query 117390 GATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC 117449 |||||||| ||| ||||| |||| |||||||| |||||||| | | ||| | Sbjct 2239 AATACCCTCGACAGCAGCAAAGGCAACAAGGCGCTGGGCGAAGGTGGAATTCTTATCTTG 2298 Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTAC 117494 | |||| || ||||| | |||||||| |||||||| || Sbjct 2299 GATCCATCGGATGGCCCAATCGGCCTTCTTGCGGATACATGGAAC 2343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589956573913400