Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1032 95.1 1e-14 >seq1032 Length=37845 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 153774 TTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAG 153833 || ||| | || ||||| | || ||||| || ||||| |||||||| || || || Sbjct 9053 TTCGGTGTCCCCATGGGCTTCGGCGGTCCCCAGGCTGCCTTCTTTGCTTGCACTGAGAAA 8994 Query 153834 TATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGTAATAAA 153893 | ||| ||||||| |||||| | || || ||| || || || || || Sbjct 8993 CACAAGCGAAAGATCCCTGGCCGTATCGTCGGTGTCTCCAAGGACAGACTTGGAAACCGT 8934 Query 153894 GCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGT 153953 || | | | || || ||||| | ||||||||||| | | || || || ||||| Sbjct 8933 GCCTTGCGTCTTGCCCTGCAGACCCGTGAGCAGCATATTCGTCGTGAGAAGGCCACCAGC 8874 Query 153954 AACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAG 154005 ||||||||||| || ||||||||||| || || ||||||| ||||| |||| Sbjct 8873 AACATCTGCACTGCCCAGGCACTGCTCGCAAACATGTCTGCTTTCTACGCAG 8822 Score = 82.4 bits (90), Expect = 9e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 153216 GGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTGAGAATCCTAGT 153275 ||||||||||| ||||| ||||| ||||| ||||||||||| || ||||| || | Sbjct 9638 GGATACTATGGCACCATCGTGCCCCCGGTCATCCAGCGAAACGTCCTCGAGAACCCCATC 9579 Query 153276 TGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTA 153335 |||||||| |||||||| || || ||||||| ||||| | | || || | Sbjct 9578 TGGTACACCAGCTACACTCCTTACCAGCCTGAGATCAGCCAGGGCCGTCTCGAGTCTCTC 9519 Query 153336 TTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTA 153395 |||| | ||| || || | | | || || || || | || | || || || || | Sbjct 9518 CTCAACTTCCAGACCCTTACCTCTGACCTGACTGGTCTGCCCGTTGCCAATGCCTCCGTC 9459 Query 153396 TTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 | || ||||| || || || ||||| || ||| Sbjct 9458 CTCGACGAAGCTACCGCCGCCGCAGAGGCCATG 9426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579189016074400