Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1409 152 1e-31 seq2769 113 1e-19 >seq1409 Length=7126 Score = 152 bits (168), Expect = 1e-31 Identities = 153/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| || || |||||||| ||||| |||| || || || || || ||| Sbjct 448 ACAAGGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCGGACAGCGTCCTGCCGTCCTCG 389 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || |||||||| || ||||| |||||||| || |||||||||||||| || Sbjct 388 AGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCTTTGTCCTGG 329 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || |||||||| ||| || ||||| || | ||||| Sbjct 328 ATCTTGGTCTTCACGTTGTCGATGGTGTCGCTGGATTCGACCTCAAGAGTGATGGTCTTG 269 Query 195112 CCTGTCAAAGTTTTTACGA 195130 || |||| |||||| |||| Sbjct 268 CCGGTCAGAGTTTTCACGA 250 Score = 116 bits (128), Expect = 8e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| |||||||| || || || || || |||| || || | || || ||| Sbjct 153 ACGAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGACAGCGTCCGGCCGTCCTCG 94 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || ||||||||||| || || || |||||||| || ||||| || |||||||| Sbjct 93 AGTTGTTTTCCTGCGAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGG 34 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||||||||| || |||||||| Sbjct 33 ATCTTGGTCTTGACGTTGTCGATGGTGTC 5 >seq2769 Length=18169 Score = 113 bits (124), Expect = 1e-19 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| |||||||| || ||||| ||||| || | |||||| | ||| || ||| Sbjct 11216 ACGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGCCCGTCCTCG 11157 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||||| || ||||||||||| || || || |||||||| ||||| || || |||||| Sbjct 11156 AGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCT 11100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109434902959595