Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1409 122 6e-23 >seq1409 Length=7126 Score = 122 bits (134), Expect = 6e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || || || | ||||| || ||||| || | ||||| || ||||| ||||| || || Sbjct 697 TTACCGCCTCGCAACCGCAGGACCAAATGCAACGTGCTCTCCTTCTGGATGTTGTAATCA 638 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || || | || | || || ||||||||||| ||||| || || || ||||||||| | Sbjct 637 GACAGCGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGCTGCTGGTCTGGT 578 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGT-TTGACGGATGCTATCGATTCACCGGCCTC 34930 || | || |||||||| ||||| ||| |||||| |||||| || | || || Sbjct 577 GGGATACCTTCCTTGTCCTGGATCTT-TGTCTTGACGTTGTCTATCGTGTCGCTGGATTC 519 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || |||||||| ||||| || ||||| || ||||||||||| Sbjct 518 TACCTCCAGCGTGATGGTTTTGCCCGTAAGTGTCTTGACGAAGATCTGCAT 468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324620602989480