Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1055 120 3e-22 >seq1055 Length=3912 Score = 120 bits (132), Expect = 3e-22 Identities = 356/549 (65%), Gaps = 0/549 (0%) Strand=Plus/Minus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 |||||| || || || || |||| | | || |||||| ||||| || || | | | Sbjct 2177 CTCAAACTCTTCTCCGTAGACATCAGCCAAGCCAGGAGCCTCATTGGGGCAGAATAGGGT 2118 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 |||||| ||| |||| |||| |||| || | ||| || |||| || || | || Sbjct 2117 CCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAGGGCCAAGAA 2058 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | ||| | | | | |||||| || ||| ||| | || ||||| || || | Sbjct 2057 GAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAA 1998 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | ||||||||||||||| || | || || || | |||| || || || || || || Sbjct 1997 GACATCAGCATGCCATGGCTCCAGGTAGATAGCAAAGGCACCAGGACGCTTGTTGCCGCC 1938 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || || | ||||||||| || ||||| | || | | ||| || ||||| || || || Sbjct 1937 CTGGTCGACATATCTGGCGGTGTTGTTGAACACACGAAGCATGGGTACAATTCCGTTGGA 1878 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484 || |||||||| | ||| || ||| | || | ||| | || || Sbjct 1877 GGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGGCC 1818 Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTC 48544 ||||| || || | || || || | |||||| || || || || || || ||||| Sbjct 1817 GATACCTCCGGCAGTCTTTGAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTC 1758 Query 48545 TATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCC 48604 ||||| || || |||| | | || || || || ||||||||| || ||||| Sbjct 1757 GATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCC 1698 Query 48605 TGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGT 48664 | ||| || | || ||||| ||||| | || |||||| || | | || ||||| Sbjct 1697 GGCATTGAAGAGGGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGT 1638 Query 48665 TTCAATAAC 48673 |||||| || Sbjct 1637 TTCAATTAC 1629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562085718407400