Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2158 125 1e-23 seq1055 114 2e-20 >seq2158 Length=8959 Score = 125 bits (138), Expect = 1e-23 Identities = 343/518 (66%), Gaps = 13/518 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| || | | ||||| || || Sbjct 1831 CTGGTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGGGAGATATTGTC 1890 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCA 47957 ||| ||| ||||||||||| |||||| || | | | | | ||| | | || | Sbjct 1891 CATAAAGTCGAAGGGGTTGGTTGTGTTGTAGAACT-TCTTATTACCAAGAGCAACGAGAA 1949 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | ||| |||||| |||| ||||| | ||||||| | |||||||| | |||| Sbjct 1950 GCCTATCGGCGACGAACTCAATGTACTGACACATGAGCTTAGCATTCATGCCGAGAAGGG 2009 Query 48018 ACAC-GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| ||| | || | || || ||||||| ||| || || ||||| | || Sbjct 2010 -CACAGGGGAGGGCATCAGTCAGGAACTCCTGCTCGATGGTGACTGCTTCAGTGATGATG 2068 Query 48077 TGCTTAACG---CGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 || ||| | || || | | | | |||| ||||| | | || | |||| Sbjct 2069 GCCTCGACGGCACTGGGGTCAGGGCGATAGTTG---AGGTGAGAGA---ACAGAAGGCAG 2122 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 ||||| || |||| | ||||||||| ||| ||| || ||||||||||| ||| || Sbjct 2123 GCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATAAGTTCGTTGGAGAAGGTGAGTCCG 2182 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| || | || || |||||||| || | ||||| ||||| |||||| || Sbjct 2183 GGCATGAGACCACGCTTCTTTAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAATA 2242 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 ||||| || || || || || || | || |||| | | ||||| ||| |||| Sbjct 2243 CCCTCGACAGCAGCAAAGGCAACAAGGCGCTGGGCGAAGGTGGAATTCTTATCTTGGATC 2302 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 || | ||||| || |||||||| ||| ||||| Sbjct 2303 CATCGGATGGCCCAATCGGCCTTCTTGCGGATACATGG 2340 >seq1055 Length=3912 Score = 114 bits (126), Expect = 2e-20 Identities = 180/257 (70%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 |||| || |||||||| || || |||||| || ||| || || | || | Sbjct 2098 ACTCGCTTCATGAACAAATCAGGAGTCCACAGGGCCAAGAAGAGATCACGGGCACGGACT 2039 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || ||| |||| ||| ||||| || || || || ||||||| || || ||||| ||| Sbjct 2038 TCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCAGCATGCCATGGC 1979 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCC 213989 |||| |||||| |||||||| || || | |||| ||||||||||| || ||||| Sbjct 1978 TCCAGGTAGATAGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGGTCGACATATCTGGCG 1919 Query 213990 ACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCT 214049 ||||||| | || || | |||||| | |||||||| ||||||||||| || Sbjct 1918 GTGTTGTTGAACACACGAAGCATGGGTACAATTCCGTTGGAGGAGCCGTTGGTTCCAGCA 1859 Query 214050 ATATACGAGCCGGAGGC 214066 || || || |||| ||| Sbjct 1858 ATGTAGGATCCGGTGGC 1842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931494548934400