Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1055 141 2e-28 seq2158 122 2e-22 >seq1055 Length=3912 Score = 141 bits (156), Expect = 2e-28 Identities = 411/621 (66%), Gaps = 20/621 (3%) Strand=Plus/Minus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || |||||| | || || ||||||| ||| |||||||| | || || || || Sbjct 2093 CTTCATGAACAAATCAGGAGTCCACAGGGCCAAGAAGAGATCACGGGCACGGACTTCTTC 2034 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 | || | ||| || | || || | |||||||| | ||||| ||||| |||||||| Sbjct 2033 CTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCAGCATGCCATGGCTCCAG 1974 Query 222157 ATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCT-CCAGAG 222215 |||| || | || || || ||||||||||| ||||| || | ||| ||| | | | Sbjct 1973 GTAGATAGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGGTCGA-CAT-ATCTGGCGGTG 1916 Query 222216 -CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATG 222274 |||||| | ||||| | ||||| | ||||||||| |||||||| || |||| Sbjct 1915 TTGTTGAACACACGAAGCATGGGTACAATTCCGTTGGAGGAGCCGTTGGTTCCAGCAATG 1856 Query 222275 TACGCACCGCCGGCCCTCAGGTTACTGGCAGAC----ATGCCGATACCACCGGC-GTGTT 222329 || | ||| ||| | || ||| || ||| | ||||||||| ||||| || || Sbjct 1855 TAGGATCCGGTGGCAC---GGATAC-GGTGGACGTTAAGGCCGATACCTCCGGCAGTCTT 1800 Query 222330 TCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGA 222389 | ||||||| || ||| |||| || ||||| ||| || || ||| ||||||||| | Sbjct 1799 T-GAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCGATACTGTCCTCCTTCA 1741 Query 222390 CGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGG 222449 || | || || || || | ||| || | | | || | ||| || || || |||| Sbjct 1740 TGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCGGCATTGAAGAGGGTGG 1681 Query 222450 GACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGA 222509 || ||| || || ||||| | ||||| |||| ||| || || | ||| | | | Sbjct 1680 GAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGTTTCAATTACTTTCTCAA 1621 Query 222510 TGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAG 222569 || || ||||| || | || || ||| ||| | ||| |||| | | | Sbjct 1620 CGTCCTCGCCGTGGATACCGACCGCAACTCGCATTATCATATGCTGTGGCCGTT---CGG 1564 Query 222570 GACCCTTGGAGCTGG---AGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGT 222626 | ||||| | ||| |||||||| || |||| || |||||||| || ||||| | Sbjct 1563 CAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCTTGAAGCCGAAGTACT 1504 Query 222627 TGAGGTCAAAGTCTCTGCCGT 222647 | || |||||| | | ||| Sbjct 1503 GGTAGTTAAAGTCACGGTCGT 1483 >seq2158 Length=8959 Score = 122 bits (134), Expect = 2e-22 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| || || |||||||||||||| ||||| || || |||||||| || || || ||| Sbjct 2273 AGCGCCTTGTTGCCTTTGCTGCTGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCA 2214 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||||| ||| || || ||||||||| || ||| |||||||| || ||| Sbjct 2213 TCTTCTGGCTAAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTTATCT 2154 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 | | ||||| || || |||| |||||||||||||| || Sbjct 2153 CCCGTGACGAAGGCCTACACACTGATTTTGCCTGCCTTCT 2114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928806659310400