Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1032 122 1e-22 >seq1032 Length=37845 Score = 122 bits (134), Expect = 1e-22 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 139282 CTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTG 139341 |||| ||||| ||||||| |||||||||||||| || || ||||||||||| ||||| | Sbjct 8822 CTGCGTAGAAAGCAGACATGTTTGCGAGCAGTGCCTGGGCAGTGCAGATGTTGCTGGTGG 8881 Query 139342 CTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGC 139401 | || || | | |||||||||||| | || || || || | | | ||| | || | Sbjct 8882 CCTTCTCACGACGAATATGCTGCTCACGGGTCTGCAGGGCAAGACGCAAGGCACGGTTTC 8941 Query 139402 CTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGTATCTTTCTCTTATACTTGTCTG 139461 | |||||| || ||| || || | |||||| ||||||| ||| | || || | Sbjct 8942 CAAGTCTGTCCTTGGAGACACCGACGATACGGCCAGGGATCTTTCGCTTGTGTTTCTCAG 9001 Query 139462 TTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAGGAATACCAAA 139513 | |||||||| ||||| || ||||| ||| | ||||| || | ||| || Sbjct 9002 TGCAAGCAAAGAAGGCAGCCTGGGGACCGCCGAAGCCCATGGGGACACCGAA 9053 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| |||||||| || || || ||||| || | | || || || || | || | || Sbjct 9426 CATGGCCTCTGCGGCGGCGGTAGCTTCGTCGAGGACGGAGGCATTGGCAACGGGCAGACC 9485 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || || | | | || || ||| | |||| | || || | | ||||| || Sbjct 9486 AGTCAGGTCAGAGGTAAGGGTCTGGAAGTTGAGGAGAGACTCGAGACGGCCCTGGCTGAT 9545 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 ||||| || || |||||||| |||||||| | || ||||| || ||||||||||| Sbjct 9546 CTCAGGCTGGTAAGGAGTGTAGCTGGTGTACCAGATGGGGTTCTCGAGGACGTTTCGCTG 9605 Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCC 140071 ||||| ||||| ||||| ||||||||||| Sbjct 9606 GATGACCGGGGGCACGATGGTGCCATAGTATCC 9638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578974624878200