Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2281 199 5e-46 seq1606 161 1e-34 seq1409 134 2e-26 seq1418 131 2e-25 seq1523 127 3e-24 seq591 122 1e-22 seq2131 93.3 6e-14 seq2769 89.7 7e-13 >seq2281 Length=20370 Score = 199 bits (220), Expect = 5e-46 Identities = 352/509 (69%), Gaps = 3/509 (1%) Strand=Plus/Plus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 ||||||||||| || || || ||||| || || ||| | | | |||| || | || Sbjct 19864 GGTATCGATTTGGGTACCACGTACTCCTGCGTGGGTATCTTCCGTGATGACCGCATTGAA 19923 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 || ||| | || ||||| ||||||||||| ||||| || | ||||||||| ||||| | Sbjct 19924 ATCATCGCCAACGACCAGGGAAACCGTACCACTCCCTCCTTCGTTGCCTTCACAGACACC 19983 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 || |||||| |||||||||||||||| || ||| || ||||||||| |||| || ||| Sbjct 19984 GAGCGTCTCATTGGAGATGCCGCAAAGAACCAGGTCGCCATGAACCCTGTCAACACCGTC 20043 Query 195485 TTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATA 195544 || || || |||||||| ||||| |||||||| || | ||||| | ||| || Sbjct 20044 TTCGATGCTAAGCGTCTCATTGGACGCAAGTTCAACGACGCCGAGGTCCAGGCCGACATG 20103 Query 195545 AAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAA 195604 ||| ||| | | | ||| | || | | ||| | ||||| || | | || || Sbjct 20104 AAGCACTTCCCCT-TCAAGATTGTCGAGAAG-GGC-GGCAAGCCCATCGTCCAGGTCGAG 20160 Query 195605 TTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAG 195664 || | || ||| |||| || || | || || ||||| || || ||||| | | ||| Sbjct 20161 TTCAAGGGCGAGGAGAAGCAGTTCACCCCTGAGGAAATCTCCTCCATGGTCCTTACCAAG 20220 Query 195665 ATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTA 195724 ||| ||||| || || | | | | ||| || || || | || || | ||||| Sbjct 20221 ATGCGTGAGACCGCCGAGGCCTACCTTGGTGGCACCGTCAACAACGCTGTCATCACTGTC 20280 Query 195725 CCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGT 195784 ||||| ||||||| || || || || ||||| || |||||||| | | ||||| ||| Sbjct 20281 CCTGCCTACTTCAACGACTCCCAGCGTCAGGCTACTAAGGACGCCGGTCTCATTGCCGGT 20340 Query 195785 CTAAACTGTCTTAGAATTATCAATGAACC 195813 || ||| || | || ||||| || || Sbjct 20341 CTCAACGTCCTCCGTATCATCAACGAGCC 20369 >seq1606 Length=48028 Score = 161 bits (178), Expect = 1e-34 Identities = 332/492 (67%), Gaps = 9/492 (2%) Strand=Plus/Minus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| || || ||||||| || || ||||||| || ||||| |||| ||| ||| Sbjct 5790 ACTGTCCCAGCCTACTTCAACGACAACCAGAGACAGGCCACCAAGGATGCTGGTGCCATT 5731 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || ||||| ||| ||| | || ||||| || || || || || || ||||| || ||| Sbjct 5730 GCCGGTCTCAACGTTCTCCGTATCATCAACGAGCCCACTGCTGCCGCCATTGCCTACGGT 5671 Query 195839 CTGGACAAGAACAAGGACGAAGATAAA---AATGTATTGATCTTTGATCTCGGTGGTGGT 195895 || | | ||| ||| | | ||||| | |||| ||||||||||||||| Sbjct 5670 CTCGGCTCTGGAAAGTCCGAGAAGGAGCGCAATGTCCTCATCTACGATCTCGGTGGTGGT 5611 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || || |||||||| || ||||| || | |||||| | ||| || ||||| || || Sbjct 5610 ACTTTCGATGTCTCTCTCCTCAACATCCAGGGTGGTGTCTTCACCGTCAAGGCCACCGCC 5551 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGAT 196015 ||||| || ||||| |||||| | || ||||| | || ||| || || | Sbjct 5550 GGTGACACCCATCTTGGTGGTCAGGACTTCGACACCAACCTCCTCGACCACTTCAAGAAG 5491 Query 196016 GAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTT 196075 |||||| || |||| ||||| ||| | ||||| | | || || || || | || Sbjct 5490 GAGTTCACCCGCAAGACCAAGAAGGATCTCTCTGGTGACTCCAGAGCCCTCCGAAGACTC 5431 Query 196076 AGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCT---CAAACAATGGTT 196132 | ||||| || || ||||| || || ||||| ||| | ||| || || | || Sbjct 5430 CGCACTGCTTGCGAGCGTGCTAAGCGTACTCT---TTCCAGCGCTACCCAGACTACTGTC 5374 Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192 |||||||| || | || ||||| |||||| || | || |||||||| ||||| Sbjct 5373 GAGATTGACTCTCTCTTCGACGGTGAGGACTTCAATGCCCAGATCACCCGTGCTCGTTTC 5314 Query 196193 GAAGAGTTAAAC 196204 || || || ||| Sbjct 5313 GAGGACTTGAAC 5302 >seq1409 Length=7126 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || || ||||| || ||||| ||||| || ||||| || || Sbjct 468 ATGCAGATCTTCGTCAAGACACTTACGGGCAAAACCATCACGCTGGAGGTAGAATCCAGC 527 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| | ||||| || || |||||||| || ||||| || ||| Sbjct 528 GACACGATAGACAACGTCAAGACAAAGATCCAGGACAAGGAAGGTATCCCACCAGACCAG 587 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || ||||| || |||||||| || || || || || || ||||||||||| Sbjct 588 CAGCGTCTCATCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACGCTGTCTGATTACAAC 647 Query 172042 GTTCAAAAGGAG 172053 | || |||||| Sbjct 648 ATCCAGAAGGAG 659 >seq1418 Length=31151 Score = 131 bits (144), Expect = 2e-25 Identities = 526/813 (65%), Gaps = 29/813 (4%) Strand=Plus/Plus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 ||||| || | || | ||||| ||| |||||||||||| | || || | | | Sbjct 4606 CCCGAGGAGGTCTCCGCCATGGTTTTGGGTAAGATGAAGGACATCGCCGAGAAGTACCTC 4665 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || | ||||| | |||| || || ||||| || || ||||||| ||| || || Sbjct 4666 GGAGAGACTGTCAGCCATGCTGTCGTCACTGTCCCCGCCTACTTCAATGACAACCAGAGA 4725 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTA-GAATTATCAATGA 195810 ||||| || || || || | | | || || ||||| ||| ||| | | || | || || Sbjct 4726 CAGGCCACCAAAGATGCCGGTACCATCGCCGGTCTTAAC-GTCATCCGTGTTGTTAACGA 4784 Query 195811 ACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGT 195870 ||||| || || || ||||| || ||||| |||| || ||||| | | || Sbjct 4785 GCCAACTGCCGCAGCTATTGCCTACGGTCTTGACATGACTGGTGACGA-GCGCCAGATC- 4842 Query 195871 ATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGG 195930 |||| ||| ||||||||||||||||| || |||||||| || ||| ||||| || Sbjct 4843 ATTG-TCTACGATCTCGGTGGTGGTACTTTCGATGTCTCTCTCCTCTCCATTGACAAGGG 4901 Query 195931 TATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGC 195990 | ||||| || |||||| ||||| || ||||| | ||||||||||||||||| Sbjct 4902 TGCCTTCGAGGTCTTGGCTACCGCTGGCGACACTCACTTGGGTGGTGAAGATTTCGACCA 4961 Query 195991 ACGTCTTCTCCGTCA-TTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGAT----ATT 196045 ||| | || || || ||| || || || || ||| | ||| || Sbjct 4962 GCGTGTCATCAACCACTTCGTC----AAGCTC---TACAACAAGAAGCACGATGTCGATA 5014 Query 196046 TCTGGAA-ATCCT-AGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAA 196103 || || | ||| | | | | || ||| | | || ||| ||||| || | Sbjct 5015 TCACCAAGAACCTCAAGACCATGGGTAAGCTCAAGCGTGAGGTTGAGAAGGCCAAGCGTA 5074 Query 196104 CTCTCTCTTC---TACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTG 196160 | || ||||| | | || || |||| || || || || || || | | Sbjct 5075 CCCTTTCTTCCCAGAAGTCT---ACCCGCATTGAAATCGAATCTTTCCACGATGGCAAGG 5131 Query 196161 ACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGA 196220 |||||| | || |||||||||| ||||| || || ||| ||| | || | || Sbjct 5132 ACTTCTCTGAGACCCTTACCCGTGCCAAATTTGAGGAATTGAACATGGATCTCTTCAAGA 5191 Query 196221 AGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTG 196280 || | | | || |||||||| || ||| || || ||| | | |||||| || ||| Sbjct 5192 AGACTCTCAAGCCAGTTGAACAGGTTCTTAAGGATGCCAAGGTCAAGAAGTCTGAGATTG 5251 Query 196281 ATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTA 196340 | || || |||||||| || || || ||||||||||| ||| | || || | ||| Sbjct 5252 ACGACATCGTCCTTGTTGGTGGCTCTACCCGTATTCCTAAGGTCCAGGAGCTCCTTGAGG 5311 Query 196341 GCTTCTTCAAT--AATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTA 196398 | |||| | || ||| | | ||| ||||||||| || || || ||||| | Sbjct 5312 AGTACTTCGGTGGAAAGAAGGCT--AGCAAGCAGATCAACCCCGACGAGGCTGTTGCCTT 5369 Query 196399 TGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGG 196431 |||||| || |||||||||| | | || || || Sbjct 5370 TGGTGCCGCTGTTCAGGCTGGTGTCCTTTCCGG 5402 >seq1523 Length=68861 Score = 127 bits (140), Expect = 3e-24 Identities = 198/280 (71%), Gaps = 16/280 (6%) Strand=Plus/Plus Query 195713 GTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCT 195772 ||||| ||||| ||||||||||||| || || ||||| ||||| || ||||| |||| | Sbjct 3436 GTTGTCACTGTTCCTGCTTACTTCAACGACTCTCAACGTCAGGCTACCAAGGATGCTGGT 3495 Query 195773 GCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCT 195832 ||||| ||||| ||| ||| | | |||| || || || || ||||| |||| Sbjct 3496 CAAATTGCTGGTCTTAACGTTCTCCGTGTCGTCAACGAGCCTACCGCTGCTGCTCTTGCC 3555 Query 195833 TATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGT-ATTG--ATCTTTGATCTCGGT 195889 || ||||| || ||| | ||||| ||| |||| ||| ||||| ||| Sbjct 3556 TACGGTCTCGAGAAGGAGCAGGAC---------CGTGTCATTGCTGTCTACGATCTTGGT 3606 Query 195890 GGTGGTACGTTTGATGTCTCACTTCTCAATATT--GAAGGTGGTATATTCGAAGTAAAGG 195947 |||||||| || ||| |||| ||||| | ||| |||| ||| | ||||| || ||| Sbjct 3607 GGTGGTACTTTCGATATCTCCATTCTCGAGATTCAGAAG--GGTGTGTTCGAGGTCAAGT 3664 Query 195948 CTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | || || || || ||||| || |||||||||||||| Sbjct 3665 CCACCAACGGAGACACCCATCTCGGAGGTGAAGATTTCGA 3704 >seq591 Length=274 Score = 122 bits (134), Expect = 1e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 195803 ATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGAT 195862 ||||| || || || || ||||| ||||| || ||||| || ||||| | || | || Sbjct 2 ATCAACGAGCCCACTGCTGCTGCCATTGCCTACGGTCTCGATAAGAAGACCGAGGGTGAG 61 Query 195863 AAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATT 195922 || || | ||||| ||||||||||||||||| || |||||||| || || | || Sbjct 62 CGCAACGTTCTCATCTTCGATCTCGGTGGTGGTACCTTCGATGTCTCCCTCCTGACCATC 121 Query 195923 GAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGAT 195982 |||| ||||| |||||||| ||| | ||||| ||||| ||||| | |||||||| || Sbjct 122 GAAGAGGGTATCTTCGAAGTCAAGTCCACTGCCGGTGACACTCACTTGGGTGGTGAGGAC 181 Query 195983 TTCGA 195987 || || Sbjct 182 TTTGA 186 >seq2131 Length=43390 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 198564 CTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAA 198623 ||||||| || | || || || ||||| || || || || | ||| | || || ||| Sbjct 3357 CTTCTCGTTGGACCTCCCGGAACCGGTAAGACGCTCCTTGCCAGAGCTGTTGCTGGCGAA 3298 Query 198624 TCGAGTGTCCCCTT--TCTTCAGTGCTCCGCGGCGAGTTTCATCGAGATGTTCGTTGGTG 198681 | | || ||||| ||| || || | || ||||| | |||||| | ||| |||| Sbjct 3297 GCAGGCGTTCCCTTCTTCTACA-TGTCCGGCTCTGAGTTCGA-CGAGATATACGTCGGTG 3240 Query 198682 TTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCATGTATCA 198741 |||| |||||||| ||||| ||||| |||| || || |||| || |||| ||||| Sbjct 3239 TTGGAGCTAAGCGTGTCCGTGAACTGTTTGCCCAGGCCCGTGCCAAAGCACCAGCTATCA 3180 Query 198742 TCTTCATTGATGAGATTGACGCTGTTGGTAAGAAGCG 198778 ||||||| || ||| |||| || ||||| ||||| Sbjct 3179 TCTTCATCGACGAGCTTGATGCCATTGGTGCCAAGCG 3143 >seq2769 Length=18169 Score = 89.7 bits (98), Expect = 7e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || |||||||| || || ||||||||||| ||||| ||||| || Sbjct 10934 ATGCAAATTTTCGTCAAGACCCTTACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 10993 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAG 171960 ||||| ||||| || |||| ||||||| || | |||| Sbjct 10994 GACACTATCGACAATGTCAAGACCAAGATCCAGGGTAAG 11032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657835386525200