Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2158 102 2e-16 seq1031 91.5 4e-13 >seq2158 Length=8959 Score = 102 bits (112), Expect = 2e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||| ||||| ||||| | || ||||| || ||||||||| || ||| | | | Sbjct 2342 TTCCATGTATCCGCAAGAAGGCCGATTGGGCCATCCGATGGATCCAAGATAAGAATTCCA 2283 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 || || || || ||||| ||||||| || ||||| ||||| ||||| || | | Sbjct 2282 CCTTCGCCCAGCGCCTTGTTGCCTTTGCTGCTGTCGAGGGTATTTTCTTCAGCGGCTCCT 2223 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || ||| || || ||||| || ||||||||| | | || ||||| || || |||| Sbjct 2222 TCGCCTCCATCTTCTGGCTAAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACG 2163 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 ||||||| || | ||||| | || ||||| || |||||| Sbjct 2162 AACTTATCTCCCGTGACGAAGGCCTACACACTGATTTTGCC 2122 >seq1031 Length=30153 Score = 91.5 bits (100), Expect = 4e-13 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 302596 CGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCA 302655 ||||| |||||||| || | ||||| ||||| || ||||| | ||| | |||||| Sbjct 24783 CGCTGGATATAACCGGTCTCTGCAGTTTTGACAGCAGTGTCAATCAAACCTTCGCGACCA 24842 Query 302656 CCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACG 302715 ||||||| |||||||| | ||| ||| || || | | | | ||| |||| ||| Sbjct 24843 GCCATAGCGTGGAAGAAGAATTCTGTGGGTGTCAGTCCACGGAGATACGAGTTCTCGACG 24902 Query 302716 AAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCA 302775 || ||||| | || || |||| ||| || || || ||||||| |||| | | Sbjct 24903 AATCCACGAGATTCTGGAGAATAGTCATCTTTTGTGAAATGTGGCAATGTCCGATATTTG 24962 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | ||| | || ||||||||||| ||||| ||| || || | || ||||||| Sbjct 24963 AATCCGAAAGGAATACGCTTTCCTTCAACTGACTGTTGCCCGACTACCGCTGTCATCTGA 25022 Query 302836 GAAATATT 302843 ||||| || Sbjct 25023 GAAATGTT 25030 Score = 89.7 bits (98), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | || ||| || ||||| | || ||||| ||| || | ||||||||| Sbjct 23985 AGAATTTCCTTAAGACGAGGCACACCTAGCGTAACGTT---CTTTGAGGACACACCAGCA 24041 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||||||||| ||||| | || |||| |||||| ||||| || || || | | Sbjct 24042 AAATGGAAAGTATTGAGAGTCATCTGGGTAGCTGGCTCTCCAATTGACTGGGCAGCCAAC 24101 Query 301933 ATACCAACCATTTCTCCTGG 301952 | ||||||||| || || || Sbjct 24102 ACACCAACCATCTCACCGGG 24121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471755652577045