Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1055 149 8e-30 seq1237 145 9e-29 seq2158 98.7 1e-14 >seq1055 Length=3912 Score = 149 bits (164), Expect = 8e-30 Identities = 208/292 (71%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||||||||| || | || |||| ||| || || || |||||||| || | ||||| Sbjct 1940 GCCCTGGTCGACATATCTGGCGGTGTTGTTGAACACACGAAGCATGGGTACAATTCCGTT 1881 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| ||||||||| || || | ||||| |||| ||| || | ||| || || Sbjct 1880 GGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAG 1821 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 |||||| || ||||| | ||| ||||| | || || || || ||||||||||| || Sbjct 1820 GCCGATACCTCCGGCAGTCTTTGAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACC 1761 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||||| ||| |||||||||| | ||| ||||| || | ||||||| |||| || Sbjct 1760 TTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGT 1701 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATG 1630353 ||||| |||||||| ||||| | || |||||| | | | | |||||| Sbjct 1700 TCCGGCATTGAAGAGGGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATG 1649 >seq1237 Length=27542 Score = 145 bits (160), Expect = 9e-29 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||||||||||||||||||| |||||||||| | || |||||| | || || ||| Sbjct 6130 GCTGCCAACTACCTCGACATCAAGGCTCTGCTCGACGTCGGATGCAAGACCGTCGCAAAC 6189 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||||| ||||||||||||||||||||||| |||||| || ||| Sbjct 6190 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATCCAGAACG 6244 >seq2158 Length=8959 Score = 98.7 bits (108), Expect = 1e-14 Identities = 139/192 (72%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||| | ||||||| |||| ||| ||||||||||| || |||||| Sbjct 2141 CCTTCGTCACGGGAGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATGAGACCACGCTTC 2200 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| ||||||| | ||| ||| ||| || || |||||||| || |||||| Sbjct 2201 TTTAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAATACCCTCGACAGCAGCAAAG 2260 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCT-CCTTGTTGATCCACTTCATCGCCCA 869358 | | || |||| ||| |||||| || | | |||| |||||| || ||||| Sbjct 2261 GCAACAAGGCGCTGGGCGAAGGTG--GAATTCTTATCTTG--GATCCATCGGATGGCCCA 2316 Query 869359 GTCGGCCTTTTT 869370 |||||||| || Sbjct 2317 ATCGGCCTTCTT 2328 Score = 89.7 bits (98), Expect = 6e-12 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||| || || || ||| |||||| |||||||||||||| | || ||||| ||||| Sbjct 1834 GTAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGGGAGATATTGTCCAT 1893 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | ||| ||||||| || |||||| ||| | || || | |||| || | Sbjct 1894 AAAGTCGAAGGGGTTGGTTGTGTTGTAGAACTTCTTATTACCAAGAGCAACGAGAAGCCT 1953 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 |||||||| ||||| |||||||| |||||||| || |||||||||| || || Sbjct 1954 ATCGGCGACGAACTCAATGTACTGACACATGAGCTTAGCATTCATGCCGAGAAGGGCACA 2013 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932 || || | || ||| ||||| | |||||| ||| || || |||||| Sbjct 2014 GGGGAGGGCATCAGTCAGGAACTCCTGCTCGATGGTGACTGCTTCAGTGATGAT 2067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106869617516345