Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1409 131 2e-25 >seq1409 Length=7126 Score = 131 bits (144), Expect = 2e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AAC 24777 ||||| || ||||| || || || || || || || ||| ||| |||||| | || ||| Sbjct 255 AAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCATCGACAAC 314 Query 24778 GGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTT 24837 | || || || |||||| ||||||||||| || || || || || |||||| | ||||| Sbjct 315 GTGAAGACCAA-GATCCAGGACAAAGAAGGCATCCCGCCAGACCAGCAACGTCTCATCTT 373 Query 24838 TGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATC 24897 || || |||||||| ||||| || | |||| || || ||||||||||||||||| Sbjct 374 CGCTGGAAAACAGCTCGAGGACGGCAGGACGCTGTCCGACTACAACATTCAAAAGGAATC 433 Query 24898 GACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||| | || |||| |||| |||||| Sbjct 434 AACTCTCCACCTTGTCCTGCGTCTGCGTGGAGGC 467 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || ||||| || ||||| || |||||| ||| | Sbjct 468 ATGCAGATCTTCGTCAAGACACTTACGGGCAAAACCATCACGCTGGAGGTAGAATCCAGC 527 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||| |||| || || ||||||||| ||||| ||||| || || || || || Sbjct 528 GACACGATAGACAACGTCAAGAC-AAAGATCCAGGACAAGGAAGGTATCCCACCAGACCA 586 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | |||||||| || |||||||| ||||| | | |||| ||||| || Sbjct 587 GCAGCGTCTCATCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACGCTGTCTGATTACAA 646 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || | || ||||| |||| ||||| || || Sbjct 647 CATCCAGAAGGAGAGCACGTTGCATTTGGTCCTGCGGTTGCGAGGCGG 694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449879126079800