Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1055 150 3e-30 seq1237 131 3e-24 seq2133 109 9e-18 seq2158 89.7 8e-12 >seq1055 Length=3912 Score = 150 bits (166), Expect = 3e-30 Identities = 190/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||||||||| | || |||| ||| || || || |||||||| |||| ||||| Sbjct 1940 GCCCTGGTCGACATATCTGGCGGTGTTGTTGAACACACGAAGCATGGGTACAATTCCGTT 1881 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| ||||||||| || || | ||||| || | ||| || | ||| || || Sbjct 1880 GGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAG 1821 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 |||||| || ||||| | ||| ||||| | || || | ||||| || |||||||| || Sbjct 1820 GCCGATACCTCCGGCAGTCTTTGAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACC 1761 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||||| ||| |||||||||| | || ||||| || | ||||||| ||| || Sbjct 1760 TTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGT 1701 Query 2073777 GCCGGCATTGAAGAGCGTGGG 2073797 |||||||||||||| ||||| Sbjct 1700 TCCGGCATTGAAGAGGGTGGG 1680 >seq1237 Length=27542 Score = 131 bits (144), Expect = 3e-24 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || ||||||||||||||||||||| | || ||||| | || ||||||||||| || ||| Sbjct 6130 GCTGCCAACTACCTCGACATCAAGGCTCTGCTCGACGTCGGATGCAAGACCGTCGCAAAC 6189 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||||||||| |||||||| |||||||||||||| |||||| || ||| Sbjct 6190 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATCCAGAACG 6244 >seq2133 Length=101640 Score = 109 bits (120), Expect = 9e-18 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| ||||| |||||| |||||||||| ||| ||| Sbjct 11971 GTACTTGGTGACGGCCTTGGTGCCCTCAGAGACAGCGTGCTTGGCCAGTTCACCGGGCAG 12030 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573 ||| || || |||| |||||| ||||| | |||| ||| ||| Sbjct 12031 GATGAGACGGACGGAGGTCTGAATCTCTCTGGTGGAGATGGTG 12073 >seq2158 Length=8959 Score = 89.7 bits (98), Expect = 8e-12 Identities = 162/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || || || || ||| |||||| |||||||||||||| | || ||||| ||||| Sbjct 1835 TAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGGGAGATATTGTCCATA 1894 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGC 794025 | ||| ||||||| || |||| ||||| || |||| ||| || || | Sbjct 1895 AAGTCGAAGGGGTTGGTTGTGTTGTAGAACTTCTTATTACCAAGAGCAACG--AGAAGCC 1952 Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCA 794085 ||||||||||| ||||||||||| |||||||| || |||||||||| || || Sbjct 1953 TATCGGCGACGAACTCAATGTACTGACACATGAGCTTAGCATTCATGCCGAGAAGGGCAC 2012 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 ||| || | || | | ||||| | |||||| ||| || || ||||||| Sbjct 2013 AGGGGAGGGCATCAGTCAGGAACTCCTGCTCGATGGTGACTGCTTCAGTGATGAT 2067 Score = 89.7 bits (98), Expect = 8e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || ||| | ||||||| ||| ||| ||||||||||| || |||||| Sbjct 2141 CCTTCGTCACGGGAGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATGAGACCACGCTTC 2200 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||||| ||| ||| ||| || || |||||||| || |||||| Sbjct 2201 TTTAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAATACCCTCGACAGCAGCAAAG 2260 Query 794461 CCGACGAGCCGCTCGGCAAAAGTG 794484 | || || |||| ||| || ||| Sbjct 2261 GCAACAAGGCGCTGGGCGAAGGTG 2284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915896959567115