Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1055 123 6e-23 >seq1055 Length=3912 Score = 123 bits (136), Expect = 6e-23 Identities = 338/509 (66%), Gaps = 9/509 (2%) Strand=Plus/Plus Query 110469 CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGA-CAATTGGCTTCTTGCTT 110527 ||||| |||| ||||| || || || ||||| | || ||| ||||||| ||||| Sbjct 1671 CATGCCTCTCCCACCCTCTTCAATGCCGGAACCCC-GCAGCCGCAAATGGCTTCCTGCTT 1729 Query 110528 TCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGC 110587 || | | || || || || ||| |||||||| || || | || || ||| Sbjct 1730 CCTCATTGACATGAAGGAGGACAGTATCGAAGGTATCTACGACACACTGAAGACCTGTGC 1789 Query 110588 TCTTATTTCTAAAAACT-CTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAG 110646 | | || || ||| ||| | ||||| || || || |||| || ||| || | | | Sbjct 1790 TTTGATCTC-AAAGACTGCCGGAGGTATCGGCCTTAACGTCCACCGTATCCGTGCCACCG 1848 Query 110647 GAGCAAATATCGCAACAGCGAAGGG-TGCTTCAACTGGACTTGTTCCAATGTTAAGAGTC 110705 || | | || || | | || || | || |||| ||| |||| || ||| | | || Sbjct 1849 GATCCTACATTGCTGGAACCAACGGCTCCTCCAAC-GGAATTGTACCCATGCTTCGTGTG 1907 Query 110706 TTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCT 110762 |||||| |||| || | |||||| | || || || || | | ||| | |||||| Sbjct 1908 TTCAACAACACCGCCAGATATGTCGACCAGGGCGGCAACAAGCGTCCTGGTGCCTTTGCT 1967 Query 110763 ATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAA 110822 ||||| || || || |||||| | ||| | ||||| ||| | || || || || || || Sbjct 1968 ATCTACCTGGAGCCATGGCATGCTGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCAT 2027 Query 110823 GGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTC 110882 ||| |||||| | || |||||| | || | || |||||| | | ||||| ||| Sbjct 2028 GGAAAGGAAGAAGTCCGTGCCCGTGATCTCTTCTTGGCCCTGTGGACTCCTGATTTGTTC 2087 Query 110883 ATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGT 110942 ||||| || ||| || | |||||| ||| | || | || || || ||||||| Sbjct 2088 ATGAAGCGAGTTGAAAAGAATGGCGATTGGACCCTATTCTGCCCCAATGAGGCTCCTGGC 2147 Query 110943 CTATCTGATGTATATGGAAAAGAGTTTGA 110971 | ||||||| || ||| |||||||||| Sbjct 2148 TTGGCTGATGTCTACGGAGAAGAGTTTGA 2176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186762848161885