Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017-
04-02] 3,285 sequences; 22,591,190 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq1055 140 5e-27
seq2158 114 2e-19
>seq1055
Length=3912
Score = 140 bits (154), Expect = 5e-27
Identities = 206/292 (71%), Gaps = 0/292 (0%)
Strand=Plus/Plus
Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953
|||||| ||| | | |||||| || | ||||| ||||| |||||||| || ||||
Sbjct 1649 CATGTCCCAGAAATACTTCACCCATGCCTCTCCCACCCTCTTCAATGCCGGAACCCCGCA 1708
Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013
||||| | | || ||||| || | |||||||||| || ||||| || |||||
Sbjct 1709 GCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGGAGGACAGTATCGAAGGTATCTA 1768
Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073
||||| || ||| || || | ||||| ||| | ||||| || ||||| || ||
Sbjct 1769 CGACACACTGAAGACCTGTGCTTTGATCTCAAAGACTGCCGGAGGTATCGGCCTTAACGT 1828
Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133
||| | || ||| | || ||||| | || || ||||||||| |||||||| |
Sbjct 1829 CCACCGTATCCGTGCCACCGGATCCTACATTGCTGGAACCAACGGCTCCTCCAACGGAAT 1888
Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185
||| ||||||||||| || || ||| |||| || | || ||||||||| ||
Sbjct 1889 TGTACCCATGCTTCGTGTGTTCAACAACACCGCCAGATATGTCGACCAGGGC 1940
>seq2158
Length=8959
Score = 114 bits (126), Expect = 2e-19
Identities = 205/296 (69%), Gaps = 5/296 (2%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||||| || || || || ||||| ||||| ||| |||| |
Sbjct 2734 GATCTGGCAAATGTAC-AAGAAGGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATCGATC 2676
Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891
|| | || | | ||||| ||| | ||||| || || ||||||
Sbjct 2675 TCTCCAAGGATATTCACGACTGGAACAACAGGCTCAATGACGATGAACGATTCTTCATCT 2616
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
|| ||| | || ||| ||||||||| |||||||||||| ||||||||| |
Sbjct 2615 CCCATGTCTTGGC-TTTCTTCGCCGCCTCCGATGGCATCGTTAACGAGAACCTCCTTGAG 2557
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
|| || | || || ||||| | || || || || | || || || |||||||||
Sbjct 2556 CGTTTCAGCAACGAAGTCCAGGTACCGGAAGCCCGGTGCTTCTATGGCTTCCAGATCATG 2497
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
|| |||||||| ||||| ||||| ||||| ||||| |||||||| || | |||||
Sbjct 2496 ATGGAAAACATTCACTCCGAAACATACTCTCTCCTCATCGACACATATATTAAGGA 2441
Score = 89.7 bits (98), Expect = 7e-12
Identities = 138/191 (72%), Gaps = 6/191 (3%)
Strand=Plus/Minus
Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGG-AGGGCCTCGACACTTTGCCGAG 1456181
|| |||||||| ||||| || |||||| |||| | | || || ||| ||| ||
Sbjct 2328 AAGAAGGCCGATTGGGCCATCCGATGGATC--CAAGATAAGAATTCCAC-CTTCGCCCAG 2272
Query 1456182 CGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATC 1456240
|| || || | |||||| || |||||||| || || ||| ||| ||| | |||||
Sbjct 2271 CGCCTTGTTGCCTTTGCTGCTGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCATC 2212
Query 1456241 TTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAG 1456300
|| ||||| |||||||| || ||||||||||| | || ||| ||||||| |||||
Sbjct 2211 TTCTGGCTAAAGAAGCGTGGTCTCATGCCCGGAC-TCACCTTCTCCAACGAACTTATCTC 2153
Query 1456301 TCGCGACGAAG 1456311
|| |||||||
Sbjct 2152 CCGTGACGAAG 2142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177494355712170
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |