Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1055 140 5e-27 seq2158 114 2e-19 >seq1055 Length=3912 Score = 140 bits (154), Expect = 5e-27 Identities = 206/292 (71%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 |||||| ||| | | |||||| || | ||||| ||||| |||||||| || |||| Sbjct 1649 CATGTCCCAGAAATACTTCACCCATGCCTCTCCCACCCTCTTCAATGCCGGAACCCCGCA 1708 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 ||||| | | || ||||| || | |||||||||| || ||||| || ||||| Sbjct 1709 GCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGGAGGACAGTATCGAAGGTATCTA 1768 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 ||||| || ||| || || | ||||| ||| | ||||| || ||||| || || Sbjct 1769 CGACACACTGAAGACCTGTGCTTTGATCTCAAAGACTGCCGGAGGTATCGGCCTTAACGT 1828 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||| | || ||| | || ||||| | || || ||||||||| |||||||| | Sbjct 1829 CCACCGTATCCGTGCCACCGGATCCTACATTGCTGGAACCAACGGCTCCTCCAACGGAAT 1888 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 ||| ||||||||||| || || ||| |||| || | || ||||||||| || Sbjct 1889 TGTACCCATGCTTCGTGTGTTCAACAACACCGCCAGATATGTCGACCAGGGC 1940 >seq2158 Length=8959 Score = 114 bits (126), Expect = 2e-19 Identities = 205/296 (69%), Gaps = 5/296 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| || || || || ||||| ||||| ||| |||| | Sbjct 2734 GATCTGGCAAATGTAC-AAGAAGGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATCGATC 2676 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 || | || | | ||||| ||| | ||||| || || |||||| Sbjct 2675 TCTCCAAGGATATTCACGACTGGAACAACAGGCTCAATGACGATGAACGATTCTTCATCT 2616 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 || ||| | || ||| ||||||||| |||||||||||| ||||||||| | Sbjct 2615 CCCATGTCTTGGC-TTTCTTCGCCGCCTCCGATGGCATCGTTAACGAGAACCTCCTTGAG 2557 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || | || || ||||| | || || || || | || || || ||||||||| Sbjct 2556 CGTTTCAGCAACGAAGTCCAGGTACCGGAAGCCCGGTGCTTCTATGGCTTCCAGATCATG 2497 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || |||||||| ||||| ||||| ||||| ||||| |||||||| || | ||||| Sbjct 2496 ATGGAAAACATTCACTCCGAAACATACTCTCTCCTCATCGACACATATATTAAGGA 2441 Score = 89.7 bits (98), Expect = 7e-12 Identities = 138/191 (72%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGG-AGGGCCTCGACACTTTGCCGAG 1456181 || |||||||| ||||| || |||||| |||| | | || || ||| ||| || Sbjct 2328 AAGAAGGCCGATTGGGCCATCCGATGGATC--CAAGATAAGAATTCCAC-CTTCGCCCAG 2272 Query 1456182 CGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATC 1456240 || || || | |||||| || |||||||| || || ||| ||| ||| | ||||| Sbjct 2271 CGCCTTGTTGCCTTTGCTGCTGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCATC 2212 Query 1456241 TTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAG 1456300 || ||||| |||||||| || ||||||||||| | || ||| ||||||| ||||| Sbjct 2211 TTCTGGCTAAAGAAGCGTGGTCTCATGCCCGGAC-TCACCTTCTCCAACGAACTTATCTC 2153 Query 1456301 TCGCGACGAAG 1456311 || ||||||| Sbjct 2152 CCGTGACGAAG 2142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177494355712170