Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1409 152 5e-32 >seq1409 Length=7126 Score = 152 bits (168), Expect = 5e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 || || || || |||| || |||||||| ||||| |||||||| || ||||||||||| Sbjct 697 TTACCGCCTCGCAACCGCAGGACCAAATGCAACGTGCTCTCCTTCTGGATGTTGTAATCA 638 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | || || || |||| || ||||| || || ||||| || | ||||||||||| | Sbjct 637 GACAGCGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGCTGCTGGTCTGGT 578 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTC 35685 || | | ||||||||| ||||||| ||| | |||| | | ||||||||| ||||| Sbjct 577 GGGATACCTTCCTTGTCCTGGATCTTTGTCTTGA-CGTTGTCTATCGTGTCGCTGGATTC 519 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| |||||| ||||| ||||| | || || || || |||||||| Sbjct 518 TACCTCCAGCGTGATGGTTTTGCCCGTAAGTGTCTTGACGAAGATCTGCAT 468 Score = 102 bits (112), Expect = 7e-17 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||||||||| |||| || || | |||| || ||||| || || || || Sbjct 430 TCCTTTTGAATGTTGTAGTCGGACAGCGTCCTGCCGTCCTCGAGCTGTTTTCCAGCGAAG 371 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || |||||||| | || | || || |||||| |||||| ||||| ||| Sbjct 370 ATGAGACGTTGCTGGTCTGGCGGGATGCCTTCTTTGTCCTGGATCTTGGTCTTCA-CGTT 312 Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||||||| ||||| ||||| | ||||| || || || |||| ||||||||| Sbjct 311 GTCGATGGTGTCGCTGGATTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCAC 252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450775089287800