Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1409 129 6e-25 seq2769 95.1 1e-14 >seq1409 Length=7126 Score = 129 bits (142), Expect = 6e-25 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-C 134545 ||||| | || |||| || ||||| || || |||||||||||||||||||||||| | Sbjct 466 CCTCCACGCAGACGCAGGACAAGGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCGGAC 407 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || || ||| ||||||||||| || || || || | ||| ||||| || ||||| Sbjct 406 AGCGTCCTGCC-GTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCTGGCGG 348 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||||||||| || || || || || || ||| | |||||| ||||| || Sbjct 347 GATGCCTTCTTTGTCCTGGATCTTGGTCTTCACGTTGTCGATGGTGTCGCTGGATTCGAC 288 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 || ||||| ||||| || ||||| | |||||| |||| Sbjct 287 CTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGA 250 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 134523 TCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAA 134581 ||||| || |||||||| || | || || | | ||| ||||||||||| |||||||| Sbjct 658 TCCTTCTGGATGTTGTAATCAGACAGCG-TCCGGCCGTCCTCGAGCTGTTTTCCTGCAAA 600 Query 134582 AATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGC 134641 || | ||||||||| || || || || ||||| || || || || ||| ||||| Sbjct 599 GATGAGACGCTGCTGGTCTGGTGGGATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTT 540 Query 134642 GTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701 ||| | |||||| ||||| || || || || |||||||| || || | || || || Sbjct 539 GTCTATCGTGTCGCTGGATTCTACCTCCAGCGTGATGGTTTTGCCCGTAAGTGTCTTGAC 480 Query 134702 GAAAATTTGCAT 134713 ||| || ||||| Sbjct 479 GAAGATCTGCAT 468 >seq2769 Length=18169 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||||||| || ||||| ||||| |||||||||||||| | Sbjct 11234 CCACCACGGAGACGGAGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAA 11175 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| ||||||||||| ||||| || |||| ||||||||| || || || Sbjct 11174 AGAGTACGCCCGTCCTCGAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGGGGGA 11115 Query 134607 ATGCCTTCTTTTTCT 134621 || || || || ||| Sbjct 11114 ATTCCCTCCTTGTCT 11100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505377647078200