Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1055 199 5e-46 seq2158 91.5 2e-13 >seq1055 Length=3912 Score = 199 bits (220), Expect = 5e-46 Identities = 587/898 (65%), Gaps = 10/898 (1%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || || || ||||| | |||||| |||| |||||| ||||| || || | | | | Sbjct 2176 TCAAACTCTTCTCCGTAGACATCAGCCAAGCCAGGAGCCTCATTGGGGCAGAATAGGGTC 2117 Query 69577 CACACATCATCATCCTT---AACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA 69633 || ||| ||| ||| |||||| ||||| || | ||| ||| |||| || || | Sbjct 2116 CA---ATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAGGGCCAAG 2060 Query 69634 AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCC 69693 |||||||| | || | |||||| ||||| || || || || || ||||| Sbjct 2059 AAGAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCA 2000 Query 69694 ATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCT 69753 | | ||||| ||||||||| || || || || || | | | || || || || || || Sbjct 1999 AAGACATCAGCATGCCATGGCTCCAGGTAGATAGCAAAGGCACCAGGACGCTTGTTGCCG 1940 Query 69754 CCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTA 69813 ||||| || | |||||||| ||||| || | || | ||||| || | ||| || || Sbjct 1939 CCCTGGTCGACATATCTGGCGGTGTTGTTGAACACACGAAGCATGGGTACAATTCCGTTG 1880 Query 69814 GATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGA 69873 || || || ||||||| ||| || ||| | || || ||| | || Sbjct 1879 GAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGG 1820 Query 69874 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCC 69933 || || ||||| || | || ||||| | |||||| |||| |||||| || ||||| Sbjct 1819 CCGATACCTCCGGCAGTCTTTGAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCT 1760 Query 69934 TCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTT 69993 || || || || || |||||| || || || ||| || |||||| | || ||| Sbjct 1759 TCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTT 1700 Query 69994 CCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTAT 70053 || ||||| || | || ||||| || || ||||| |||| | || | ||||||||| Sbjct 1699 CCGGCATTGAAGAGGGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTAT 1640 Query 70054 GTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACAT 70112 |||||||| || || | ||| | | | || || || | ||| || ||||| | ||| Sbjct 1639 GTTTCAATTACTTTCTCAACGTCCTCGCCG-TGGATACCGACCGCAACTCGCATTATCAT 1581 Query 70113 ATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGT 70172 |||||| || ||||| | || || || | ||||||||| |||| || || Sbjct 1580 ATGCTGTGGCCGTTCGGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGT 1521 Query 70173 TTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTT 70232 || || || || || | ||| |||||| | ||||| | ||| | || || |||| Sbjct 1520 CTTGAAGCCGAAGTACTGGTAGTTAAAGTCACGGTCGTACACGATAGCCGAGTTGAGTTC 1461 Query 70233 ATCCTTATATTTGGTAACTATATCCATAACAGTAGGTGAGATAATCGGAGATCGTTTACC 70292 || || ||| | || || ||| | || || || |||| | || Sbjct 1460 TTCAGCATGTTTCATGACGATCTCCCGGGTCTTCTCAGATATCATGGGAGCAGGCCGGCC 1401 Query 70293 ATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTA-AATAGtttttttG 70351 || || || || ||||||| | | || || || || || | ||| | || || | Sbjct 1400 GTTCTTTGGGTTGACATAGTGATAGAGGTCATCTATAAC-GGACGAGAATTGCTTCTTGG 1342 Query 70352 TTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATG 70409 ||| |||||| | || || | |||||||| || || ||||| |||||||| ||||| Sbjct 1341 TTTGCTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTGGATG 1284 Score = 93.3 bits (102), Expect = 6e-14 Identities = 372/581 (64%), Gaps = 15/581 (3%) Strand=Plus/Minus Query 68362 TCCTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATA 68421 |||| || | ||| || || ||||| | || || | | || || ||||||||||| Sbjct 3404 TCCTGGTCTACTGTGAATTGGATGGGAGCAGACGCAGCCATGGTGCGGAGATAGTACATG 3345 Query 68422 CCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTT 68481 ||||| || ||||| || |||| ||| ||| |||||||| || | || | | | Sbjct 3344 CCGGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATACTGGTGATCTT----TCCCAT 3289 Query 68482 GGATCGGCT-----ATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTAT 68536 || |||||| | || || || | ||||||| || |||||||| || |||| || Sbjct 3288 GG-TCGGCTCTTTCAAGTGGATGTTGAGCGATTGAGACTGGTCGATGAAGGCGCCTCGAT 3230 Query 68537 CTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTT 68596 | || ||||| | | |||| | ||||| ||||||||| | ||||| | | | Sbjct 3229 CAGCGGCCATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGAGCCT 3170 Query 68597 TGATATCATCTGGAAGGCTCG---TATTTTGAATGGATCCACCATCGGATATAATTATAT 68653 ||||||| |||| | | | | | ||||| ||||| ||||| || | || || | Sbjct 3169 TGATATCTGCTGGGATGTTAGGGATGTTTTGGATGGAACCACCGTCAGCGATGATACGGT 3110 Query 68654 TCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAA 68713 |||| || | || ||||| || || || | || || ||| || | Sbjct 3109 TCTTCATATTGTCGGACCACAGGCCGAGGTCGACTAGGTCTTTGAGAAGCCACGGGTTGA 3050 Query 68714 CTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCA 68773 | | ||| || || |||| | || | || | ||| || || ||| || ||||| | Sbjct 3049 CGACTTGGAACTCGCCAGCAAGTACACGGCGTGAGTAGATGTTGGAGGTGTAAGGTTCAA 2990 Query 68774 CAGATTCATTATTTCCCAGAATTTGAGCAGTTGAT-GCAGTTGGCATAGGTGCCACCAAT 68832 | || || || ||||| ||| | | || | ||||||||||| || || | | | Sbjct 2989 AGCACTCGTTGAAGCCAAGAATCTGA-CTGGTGCTGGCAGTTGGCATGGGCGCAAGTAGT 2931 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 || || || | | ||| || | ||| | | |||| ||| | ||| ||||| || Sbjct 2930 AAGCTGTTACGGACACCGTGCTTGGAGATCTCAGCTTTAAGACCATCCCAGTCCCAGAGG 2871 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCC 68933 || | ||| || ||||| | ||||||||| || || || Sbjct 2870 TCGGTTGGCGTTACGTTCCACATATCGTATTGAAGGATACC 2830 >seq2158 Length=8959 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| | |||||| || ||| |||||||| || || | || | |||||| || Sbjct 2111 AACAGAAGGCAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATAAGTTCGTTGGAG 2170 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || |||||||| ||||| ||||||||||| || ||||| || |||| || || || || Sbjct 2171 AAGGTGAGTCCGGGCATGAGACCACGCTTCTTTAGCCAGAAGATGGAGGCGAAGGAGCCG 2230 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 ||||| || || || || || ||||| |||||||| Sbjct 2231 CTGAAGAAAATACCCTCGACAGCAGCAAAGGCAACAAG 2268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686880593807400