Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1251 100 2e-16 >seq1251 Length=12228 Score = 100 bits (110), Expect = 2e-16 Identities = 245/373 (66%), Gaps = 9/373 (2%) Strand=Plus/Minus Query 19552 CACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG---------TTCT 19602 |||||||| || | ||||||||||| || | || || || ||||| | | Sbjct 3956 CACATTATCATTTTTGATGAATTGGATGCCGTTTGCAAACAGAGAGGCAGCGGTGCTGGT 3897 Query 19603 GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 |||| || || || ||| | ||||||||| ||||| || ||||| | ||||||||| Sbjct 3896 GGTGGAACAGGTGTTGGTGATAGTGTTGTCAACCAACTTCTATCAAAGCTCGACGGTGTT 3837 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 |||| |||| ||||| | |||| || ||||| || || |||| | || || Sbjct 3836 GACCAGTTGAACAATATCCTCCTTATAGGAATGACAAACCGAATGGACATGATTGATGAT 3777 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 ||| || | || || ||||| ||||| | | || ||||| | | || |||||| | Sbjct 3776 GCCCTACTGCGTCCGGGTCGATTGGAGGTCCATATGGAAATATCCCTCCCAGATGAACAT 3717 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAAT 19842 || | | |||| || || || ||||| | |||||| | || | || | | Sbjct 3716 GGCAGGGCTCAAATATTGAAGATCCATACCCAGAAAATGCGAGACAACGATGTTATGGAC 3657 Query 19843 GACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTT 19902 | ||||| ||||| | || ||||||| |||||| |||| | || || ||| || Sbjct 3656 CAAGATGTGGATCTTAAGGAGCTTGCAGCACTTACCAAGAACTTTTCTGGTGCCGAAATT 3597 Query 19903 GAGGGATTAGTGA 19915 ||||| |||| Sbjct 3596 AGCGGATTGGTGA 3584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397440087476425