Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017-
04-02] 3,285 sequences; 22,591,190 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq1055 123 3e-23
seq2158 120 4e-22
>seq1055
Length=3912
Score = 123 bits (136), Expect = 3e-23
Identities = 353/536 (66%), Gaps = 15/536 (3%)
Strand=Plus/Minus
Query 111557 TCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACCG 111615
||||| ||||||||||| | || ||| ||||||||| | |||||||| | ||| |
Sbjct 2101 TCAACTCGCTTCATGAACAAATCAGGAGTCCACAGGGCCAAGAAGAGATCACGGGCACGG 2042
Query 111616 AGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCA 111675
| | ||||| | || ||||| || | ||||||||||| | || ||| || |||||
Sbjct 2041 A-CTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCAGCATGCCA 1983
Query 111676 TGGCTCAAGATAGACTGCGATAGATCC------CTT-TCGACGCCCAGCTTGATTTACAT 111728
|||||| || |||| || | | || ||| | | ||||| | | || |||
Sbjct 1982 TGGCTCCAGGTAGATAGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGGTCGA----CAT 1927
Query 111729 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 111788
| | || ||| ||| || || |||||||| || | ||| || | || || || |
Sbjct 1926 ATCTGGCGGTGTTGTTGAACACACGAAGCATGGGTACAATTCCGTTGGAGGAGCCGTTGG 1867
Query 111789 TCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAG 111848
| || ||| ||| |||| | | | |||| || | || ||||| || |
Sbjct 1866 TTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGGCCGATACCTCCGG 1807
Query 111849 CCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCT 111908
| ||||||||| ||||| | | || || | |||||||| | ||| |||||
Sbjct 1806 CAGTCTTTGAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCGATACTGTCCT 1747
Query 111909 CCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGA 111968
|||| || | || |||||||| | ||| ||||| || || || ||||||||||
Sbjct 1746 CCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCGGCATTGAAGA 1687
Query 111969 GGGTTGGTGTTGCGTGAATGAA-CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACA 112027
|||| || | || || |||| || | |||||||| | |||||| || | ||
Sbjct 1686 GGGTGGGAGAGGCATGGGTGAAGTATTTC-TGGGACATGAGATTGTATGTTTCAATTACT 1628
Query 112028 GAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083
|||| ||| || |||||||| |||| || || ||||| | ||| | ||||||
Sbjct 1627 TTCTCAACGTCCTCGCCGTGGATACCGACCGCAACTCGCATTATCATATGCTGTGG 1572
Score = 122 bits (134), Expect = 1e-22
Identities = 678/1070 (63%), Gaps = 30/1070 (3%)
Strand=Plus/Minus
Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422
|||||||||||||| ||||||||||| || | ||||| || | |||||| | |
Sbjct 3359 CGGAGATAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATACTGGTG 3300
Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482
| ||| ||| || || || || | || ||| | |||| ||||| ||||||
Sbjct 3299 ATCTTTCCCATGGTCGGCTCTTTCAAGTGGATGTTGAGCGATTGAGACTGGTCGATGAAG 3240
Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGACAT--CCTTCATCTTAATTTCCCAAACTGTGC 110540
|| || | || ||||| | || | | | || | ||||||||| || ||
Sbjct 3239 GCGCCTCGATCAGCGGCCATCTGAACAATAGTACGTTGAGA--AATTTCCCACACGGTCT 3182
Query 110541 GATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCT 110600
|| ||| ||||||||| ||||||| | | ||| || ||||||||||| ||
Sbjct 3181 TGTACAGAGCCTTGATATCTGCTGGGATGTTAGGGATGTTTTGGATGGAACCACCG---- 3126
Query 110601 TCACC-ATGAGA---TCCTTCATATCCTTGGACCAGAGACCAA--TCTTCTTGAGGTCAT 110654
||| | |||| | | |||||||| | |||||| || || | || || ||||| |
Sbjct 3125 TCAGCGATGATACGGTTCTTCATATTGTCGGACCACAGGCCGAGGTCGACT--AGGTCTT 3068
Query 110655 TGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGT 110714
||| || | |||||| | ||||| || || || | | ||||||||
Sbjct 3067 TGAGAAGCCACGGGTTGACGACTTGGAACTCGCCAGCAAGTACACGGCGTGAGTAGATGT 3008
Query 110715 TTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATT-TGTGCGGTGGAGGCTGTT 110773
| | ||||| ||||||||||| || || | |||||| | || |||| ||| |||
Sbjct 3007 TGGAGGTGTAAGGTTCAAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTGCTGGCAGTT 2949
Query 110774 GGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGA 110833
||||| || || | | | |||||||| | ||| | || ||| | || |||
Sbjct 2948 GGCATGGGCGCAAGTAGTAAGCTGTTACGGACACCGTGCTTGGAGATCTCAGCTTTAAGA 2889
Query 110834 ACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCC 110892
|||||||||| || | | |||| | || |||| |||| || | ||||| | ||
Sbjct 2888 CCATCCCAGTCCCAGAGGTCGGTTGGCGTTACGTTCC-ACATATCGTATTGAAGGATACC 2830
Query 110893 TTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACA 110952
|| || | || ||||||||| ||| || | ||| | | | | || | |||||
Sbjct 2829 CTGAGAAACAGGGGAACCCTCATAGGAGGAGTATGGACCATCGACCTTGGCAAGCTCACA 2770
Query 110953 GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGC 111012
|| || | || || || | ||| || ||||| | | |||| ||||||
Sbjct 2769 CGATGCGGTCAACGCAGCATGGTAAAGGGTCTCGAAGATTTGGGTGTTCAAAAGCTTGGC 2710
Query 111013 TTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACC 111072
||| ||| || || | | || | || |||| || || || || || ||
Sbjct 2709 TTCGGGTGAGTCGAAGGGCAATCGAAGAGCGAGGAAAGCATCAGCAAGTCCCTGGACGCC 2650
Query 111073 CAAACCAATAGGTCTGTGTCGCATATTAGACTT--TCGCGCAGTCTCAACGGGATAAAAA 111130
| | |||| || | || || | ||| ||| ||| || ||||| || ||
Sbjct 2649 GACAGCAATGGGACGATGACGGAAATTG--CTTCGTCGTGCCTCTTCAACCGGGTAGTGG 2592
Query 111131 TTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTT 111190
|| | || |||| | ||| | ||| || ||| | || || | |||||| |||||
Sbjct 2591 TTCCCATCTATGATCCTGTTCAAGTTTCTGACAACGACCTGAGTAACTTCATGGAGTTTG 2532
Query 111191 TCATAATCAAA---AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCC 111247
|| |||| | | |||| | ||| ||| | | ||||||||||| ||||||
Sbjct 2531 CCAAAATCGTATTCACCGCGAA---CAGCATCCACAAAGGTGGGAAGGGCGATAGATGCC 2475
Query 111248 AAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTG 111307
|| |||||||| || |||||| | || || || | ||||| || || | ||
Sbjct 2474 AAGTTGCAAACTGCAACCTCATCTGGGGCGGTATATTCAACGATTTCAGTGCAAAGATTT 2415
Query 111308 GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAG 111367
|| || || || || | ||||| ||||| ||||| |||||| | |||||||||
Sbjct 2414 GAGCTACGGATAGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCAGGAATCCTTGTAA 2355
Query 111368 AGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417
||||| | || | || ||||||||||| | | ||||| || | |||
Sbjct 2354 AGCATAAAAGGGTTTCCAGTCTCCGTCTGGGCCTCAAGAATGGCGTACCA 2305
>seq2158
Length=8959
Score = 120 bits (132), Expect = 4e-22
Identities = 344/525 (66%), Gaps = 32/525 (6%)
Strand=Plus/Plus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
|| || || || |||||||| |||||||||||||| ||| ||||| || || ||||||
Sbjct 1835 TAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGGGAGATATTGTCCATA 1894
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA--TGGGTGGCACCC----CAACTTGTTTGAGG 122484
||||| || || || | | ||| | | | | ||| |||| |||
Sbjct 1895 AAGTCGAAGGGGTTGGTTGTGTTGTAGAACTTCTTATTACCAAGAGCAAC------GAGA 1948
Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544
|| | ||| | || |||||||||||| |||| || || ||||| |||| |||
Sbjct 1949 AGCCTATCGGCGACGAACTCAATGTACTGACACATGAGCTTAGCATTCATGCCGAGAAGG 2008
Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604
||| ||||| || || | |||| | | ||| || || || || | | ||||
Sbjct 2009 GCACAGGGGAGGGCATCAGTCAGGAACTCCTGCTCGATGGTGACTGCTTCAGTGATGATG 2068
Query 122605 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGA----AGAGCTC------ 122654
|| | || ||| | |||| | || | ||| ||| |||| |
Sbjct 2069 GCCTCGA------CGGCACTGGGGTCAGGGCG-ATAGT--TGAGGTGAGAGAACAGAAGG 2119
Query 122655 CACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAG 122714
|| |||||| || ||| || || || || ||||| |||||||| || |||||| ||
Sbjct 2120 CA-GGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATAAGTTCGTTGGAGAAGGTGAG 2178
Query 122715 ACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAA 122774
|| ||||||||||| |||||||| | ||| | || | | ||| || ||| ||||||
Sbjct 2179 TCCGGGCATGAGACCACGCTTCTTTAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAA 2238
Query 122775 GATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC 122834
|||||||| ||| ||||| |||| |||||| | |||||||| | | ||| | |
Sbjct 2239 AATACCCTCGACAGCAGCAAAGGCAACAAGGCGCTGGGCGAAGGTGGAATTCTTATCTTG 2298
Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTAC 122879
| |||| || ||||| | |||||||| |||||||| ||
Sbjct 2299 GATCCATCGGATGGCCCAATCGGCCTTCTTGCGGATACATGGAAC 2343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628006211436000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |