Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1055 123 3e-23 seq2158 120 4e-22 >seq1055 Length=3912 Score = 123 bits (136), Expect = 3e-23 Identities = 353/536 (66%), Gaps = 15/536 (3%) Strand=Plus/Minus Query 111557 TCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACCG 111615 ||||| ||||||||||| | || ||| ||||||||| | |||||||| | ||| | Sbjct 2101 TCAACTCGCTTCATGAACAAATCAGGAGTCCACAGGGCCAAGAAGAGATCACGGGCACGG 2042 Query 111616 AGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCA 111675 | | ||||| | || ||||| || | ||||||||||| | || ||| || ||||| Sbjct 2041 A-CTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCAGCATGCCA 1983 Query 111676 TGGCTCAAGATAGACTGCGATAGATCC------CTT-TCGACGCCCAGCTTGATTTACAT 111728 |||||| || |||| || | | || ||| | | ||||| | | || ||| Sbjct 1982 TGGCTCCAGGTAGATAGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGGTCGA----CAT 1927 Query 111729 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 111788 | | || ||| ||| || || |||||||| || | ||| || | || || || | Sbjct 1926 ATCTGGCGGTGTTGTTGAACACACGAAGCATGGGTACAATTCCGTTGGAGGAGCCGTTGG 1867 Query 111789 TCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAG 111848 | || ||| ||| |||| | | | |||| || | || ||||| || | Sbjct 1866 TTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGGCCGATACCTCCGG 1807 Query 111849 CCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCT 111908 | ||||||||| ||||| | | || || | |||||||| | ||| ||||| Sbjct 1806 CAGTCTTTGAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCGATACTGTCCT 1747 Query 111909 CCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGA 111968 |||| || | || |||||||| | ||| ||||| || || || |||||||||| Sbjct 1746 CCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCGGCATTGAAGA 1687 Query 111969 GGGTTGGTGTTGCGTGAATGAA-CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACA 112027 |||| || | || || |||| || | |||||||| | |||||| || | || Sbjct 1686 GGGTGGGAGAGGCATGGGTGAAGTATTTC-TGGGACATGAGATTGTATGTTTCAATTACT 1628 Query 112028 GAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 |||| ||| || |||||||| |||| || || ||||| | ||| | |||||| Sbjct 1627 TTCTCAACGTCCTCGCCGTGGATACCGACCGCAACTCGCATTATCATATGCTGTGG 1572 Score = 122 bits (134), Expect = 1e-22 Identities = 678/1070 (63%), Gaps = 30/1070 (3%) Strand=Plus/Minus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 |||||||||||||| ||||||||||| || | ||||| || | |||||| | | Sbjct 3359 CGGAGATAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATACTGGTG 3300 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482 | ||| ||| || || || || | || ||| | |||| ||||| |||||| Sbjct 3299 ATCTTTCCCATGGTCGGCTCTTTCAAGTGGATGTTGAGCGATTGAGACTGGTCGATGAAG 3240 Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGACAT--CCTTCATCTTAATTTCCCAAACTGTGC 110540 || || | || ||||| | || | | | || | ||||||||| || || Sbjct 3239 GCGCCTCGATCAGCGGCCATCTGAACAATAGTACGTTGAGA--AATTTCCCACACGGTCT 3182 Query 110541 GATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCT 110600 || ||| ||||||||| ||||||| | | ||| || ||||||||||| || Sbjct 3181 TGTACAGAGCCTTGATATCTGCTGGGATGTTAGGGATGTTTTGGATGGAACCACCG---- 3126 Query 110601 TCACC-ATGAGA---TCCTTCATATCCTTGGACCAGAGACCAA--TCTTCTTGAGGTCAT 110654 ||| | |||| | | |||||||| | |||||| || || | || || ||||| | Sbjct 3125 TCAGCGATGATACGGTTCTTCATATTGTCGGACCACAGGCCGAGGTCGACT--AGGTCTT 3068 Query 110655 TGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGT 110714 ||| || | |||||| | ||||| || || || | | |||||||| Sbjct 3067 TGAGAAGCCACGGGTTGACGACTTGGAACTCGCCAGCAAGTACACGGCGTGAGTAGATGT 3008 Query 110715 TTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATT-TGTGCGGTGGAGGCTGTT 110773 | | ||||| ||||||||||| || || | |||||| | || |||| ||| ||| Sbjct 3007 TGGAGGTGTAAGGTTCAAAGCACTCGTTGA-AGCCAAGAATCTGACTGGTGCTGGCAGTT 2949 Query 110774 GGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGA 110833 ||||| || || | | | |||||||| | ||| | || ||| | || ||| Sbjct 2948 GGCATGGGCGCAAGTAGTAAGCTGTTACGGACACCGTGCTTGGAGATCTCAGCTTTAAGA 2889 Query 110834 ACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCC 110892 |||||||||| || | | |||| | || |||| |||| || | ||||| | || Sbjct 2888 CCATCCCAGTCCCAGAGGTCGGTTGGCGTTACGTTCC-ACATATCGTATTGAAGGATACC 2830 Query 110893 TTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACA 110952 || || | || ||||||||| ||| || | ||| | | | | || | ||||| Sbjct 2829 CTGAGAAACAGGGGAACCCTCATAGGAGGAGTATGGACCATCGACCTTGGCAAGCTCACA 2770 Query 110953 GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGC 111012 || || | || || || | ||| || ||||| | | |||| |||||| Sbjct 2769 CGATGCGGTCAACGCAGCATGGTAAAGGGTCTCGAAGATTTGGGTGTTCAAAAGCTTGGC 2710 Query 111013 TTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACC 111072 ||| ||| || || | | || | || |||| || || || || || || Sbjct 2709 TTCGGGTGAGTCGAAGGGCAATCGAAGAGCGAGGAAAGCATCAGCAAGTCCCTGGACGCC 2650 Query 111073 CAAACCAATAGGTCTGTGTCGCATATTAGACTT--TCGCGCAGTCTCAACGGGATAAAAA 111130 | | |||| || | || || | ||| ||| ||| || ||||| || || Sbjct 2649 GACAGCAATGGGACGATGACGGAAATTG--CTTCGTCGTGCCTCTTCAACCGGGTAGTGG 2592 Query 111131 TTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTT 111190 || | || |||| | ||| | ||| || ||| | || || | |||||| ||||| Sbjct 2591 TTCCCATCTATGATCCTGTTCAAGTTTCTGACAACGACCTGAGTAACTTCATGGAGTTTG 2532 Query 111191 TCATAATCAAA---AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCC 111247 || |||| | | |||| | ||| ||| | | ||||||||||| |||||| Sbjct 2531 CCAAAATCGTATTCACCGCGAA---CAGCATCCACAAAGGTGGGAAGGGCGATAGATGCC 2475 Query 111248 AAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTG 111307 || |||||||| || |||||| | || || || | ||||| || || | || Sbjct 2474 AAGTTGCAAACTGCAACCTCATCTGGGGCGGTATATTCAACGATTTCAGTGCAAAGATTT 2415 Query 111308 GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAG 111367 || || || || || | ||||| ||||| ||||| |||||| | ||||||||| Sbjct 2414 GAGCTACGGATAGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCAGGAATCCTTGTAA 2355 Query 111368 AGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||||| | || | || ||||||||||| | | ||||| || | ||| Sbjct 2354 AGCATAAAAGGGTTTCCAGTCTCCGTCTGGGCCTCAAGAATGGCGTACCA 2305 >seq2158 Length=8959 Score = 120 bits (132), Expect = 4e-22 Identities = 344/525 (66%), Gaps = 32/525 (6%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| ||| ||||| || || |||||| Sbjct 1835 TAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGGGAGATATTGTCCATA 1894 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA--TGGGTGGCACCC----CAACTTGTTTGAGG 122484 ||||| || || || | | ||| | | | | ||| |||| ||| Sbjct 1895 AAGTCGAAGGGGTTGGTTGTGTTGTAGAACTTCTTATTACCAAGAGCAAC------GAGA 1948 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 || | ||| | || |||||||||||| |||| || || ||||| |||| ||| Sbjct 1949 AGCCTATCGGCGACGAACTCAATGTACTGACACATGAGCTTAGCATTCATGCCGAGAAGG 2008 Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 ||| ||||| || || | |||| | | ||| || || || || | | |||| Sbjct 2009 GCACAGGGGAGGGCATCAGTCAGGAACTCCTGCTCGATGGTGACTGCTTCAGTGATGATG 2068 Query 122605 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGA----AGAGCTC------ 122654 || | || ||| | |||| | || | ||| ||| |||| | Sbjct 2069 GCCTCGA------CGGCACTGGGGTCAGGGCG-ATAGT--TGAGGTGAGAGAACAGAAGG 2119 Query 122655 CACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAG 122714 || |||||| || ||| || || || || ||||| |||||||| || |||||| || Sbjct 2120 CA-GGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATAAGTTCGTTGGAGAAGGTGAG 2178 Query 122715 ACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAA 122774 || ||||||||||| |||||||| | ||| | || | | ||| || ||| |||||| Sbjct 2179 TCCGGGCATGAGACCACGCTTCTTTAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAA 2238 Query 122775 GATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC 122834 |||||||| ||| ||||| |||| |||||| | |||||||| | | ||| | | Sbjct 2239 AATACCCTCGACAGCAGCAAAGGCAACAAGGCGCTGGGCGAAGGTGGAATTCTTATCTTG 2298 Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTAC 122879 | |||| || ||||| | |||||||| |||||||| || Sbjct 2299 GATCCATCGGATGGCCCAATCGGCCTTCTTGCGGATACATGGAAC 2343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628006211436000