Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2158 132 6e-26 >seq2158 Length=8959 Score = 132 bits (146), Expect = 6e-26 Identities = 304/453 (67%), Gaps = 10/453 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || ||||| ||||||||||||||||| ||||| || | | | |||||| |||||| Sbjct 1835 TAATCTCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGGGAGATATTGTCCATA 1894 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCA-AATTGCTGGCACT-CCAATCTGTTTGAGGAGAC 129845 || || || ||||| ||| ||| | || | || | | |||| ||| || | Sbjct 1895 AAGTCGAAGGGGTTGGTTGTGTTGTAGAACTTCTT--ATTACCAAGAGCAACGAGAAGCC 1952 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 ||| | |||| |||||||||||| | |||| || | ||||| |||| ||| || Sbjct 1953 TATCGGCGACGAACTCAATGTACTGACACATGAGCTTAGCATTCATGCCGAGAAGGGCAC 2012 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | ||||| || || | |||| ||| ||| ||| || ||||| | |||||| | Sbjct 2013 AGGGGAGGGCATCAGTCAGGAACTCCTGCTCGATGGTGACTGCTTCAGTGATGATGGCCT 2072 Query 129966 GAATGGTCTCCGTGCCAGGTCTAT---TGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 130022 | || | | |||| | || || | || ||| || |||||| | Sbjct 2073 CGACGGCACTGGGGTCAGGGCGATAGTTGAGGTGAGA---GAACAGAAGGCAGGCAAAAT 2129 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| || || |||||||||||||| ||||| || |||||| || || ||||||| Sbjct 2130 CAGTGTGTAGGCCTTCGTCACGGGAGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATGA 2189 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 |||| |||||||| | |||||| || | || ||||| |||||| || ||||| | Sbjct 2190 GACCACGCTTCTTTAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAATACCCTCGA 2249 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 || || || |||| || |||| || |||| Sbjct 2250 CAGCAGCAAAGGCAACAAGGCGCTGGGCGAAGG 2282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618409805504600