Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1055 159 4e-34 seq2158 118 1e-21 >seq1055 Length=3912 Score = 159 bits (176), Expect = 4e-34 Identities = 474/718 (66%), Gaps = 16/718 (2%) Strand=Plus/Plus Query 104888 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGAC 104947 ||| | || ||||| || | || || |||||||| | || | ||||||||||| || Sbjct 2305 TGGTACGCCATTCTTGAGGCCCAGACGGAGACTGGAAACCCTTTTATGCTTTACAAGGAT 2364 Query 104948 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGT 105007 |||| |||| |||||| || || ||||| | ||| ||| || || ||||| || Sbjct 2365 TCCTGCAACCGAAAGAGCAACCAGAAGAACCTTGGTACTATCCGTAGCTCAAATCTTTGC 2424 Query 105008 ACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATC 105067 || |||||| | |||| ||| | | ||||||| || || || ||| | ||||| ||| Sbjct 2425 ACTGAAATCGTTGAATATACCGCCCCAGATGAGGTTGCAGTTTGCAACTTGGCATCTATC 2484 Query 105068 GCTCTCCCCAAGTATGTGGATCCAG-AGACAAAGACATTTGATTATGAAAAACTCCACGA 105126 || || |||| | ||||||| | | | || || |||| || |||||||| || Sbjct 2485 GCCCTTCCCACCTTTGTGGATGCTGTTCGCGGTGA-ATACGATTTTGGCAAACTCCATGA 2543 Query 105127 AGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT 105186 |||||| | || || |||| | ||||| | || ||| | || ||||| || Sbjct 2544 AGTTACTCAGGTCGTTGTCAGAAACTTGAACAGGATCATAGATGGGAACCACTACCCGGT 2603 Query 105187 TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCT 105246 ||| || || | ||| | | || ||||| |||| | |||| || ||||| || Sbjct 2604 TGAAGAGGCACGACGAAGCAATTTCCGTCATCGTCCCATTGCTGTCGGCGTCCAGGGACT 2663 Query 105247 CGCGGATGTATTCAT---TCTTTG-TCGCCACGCATTTGATTCCGACGAAGCGAAGGAAA 105302 || |||| ||| | |||| | | || | || || || |||||| ||| Sbjct 2664 TGCTGATGCTTTCCTCGCTCTTCGATTGC----CCTTCGACTCACCCGAAGCCAAGCTTT 2719 Query 105303 TCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA-GGCGAGTTCAGAGTTG 105361 | || | | || || |||||| | || || || || |||| || | ||| | Sbjct 2720 TGAACACCCAAATCTTCGAGACCCTTTACCATGCTGC-GTTGACCGCATCGTGTGAGCTT 2778 Query 105362 GCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTT 105421 || |||| ||||||||||| ||| ||||||||| || | ||| || || | ||| Sbjct 2779 GCCAAGGTCGATGGTCCATACTCCTCCTATGAGGGTTCCCCTGTTTCTCAGGGTATCCTT 2838 Query 105422 CAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGGGAAGCTCTCAAGGA 105480 |||| ||||||| |||| || | |||| | | || |||||||| | ||| || | Sbjct 2839 CAATACGATATGT-GGAACGTAACGCCAACCGACCTCTGGGACTGGGATGGTCTTAAAGC 2897 Query 105481 ACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTC 105540 ||| || | ||| | |||||||| | || | || || |||||||| ||| Sbjct 2898 TGAGATCTCCAAGCACGGTGTCCGTAACAGCTTACTACTTGCGCCCATGCCAACTGCCAG 2957 Query 105541 CACCGCACA-AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 |||| || | |||||| | || || ||||||||||| ||||| | |||||||| Sbjct 2958 CACCAGTCAGATTCTTGGCT-TCAACGAGTGCTTTGAACCTTACACCTCCAACATCTA 3014 Score = 149 bits (164), Expect = 7e-31 Identities = 403/613 (66%), Gaps = 13/613 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| | ||| | ||||| || || ||||||| || || || ||| |||| || Sbjct 1572 CCACAGCATATGATAATGCGAGTTGCGGTCGGTATCCACGGCGAGGACGTTGAGAAAGTA 1631 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGCAACACCAACCCTCTT 104340 | || |||||| | |||||||| | || |||| || || | || |||||||| Sbjct 1632 ATTGAAACATACAATCTCATGTCCCA-GAAATACTTCACCCATGCCTCTCCCACCCTCTT 1690 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 |||||| || || || || |||||| | |||||||| || | || |||||||| Sbjct 1691 CAATGCCGGAACCCCGCAGCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGGAGGA 1750 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | ||| | |||||||| | || || | | ||||| ||||||||| || || Sbjct 1751 CAGTATCGAAGGTATCTACGACACACTGAAGACCTGTGCTTTGATCTCAAAGACTGCCGG 1810 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 ||||| || | || |||| | | | |||| ||| ||| || || || Sbjct 1811 AGGTATCGGCCTTAACGTCCACCGTATCCGTGCCACCGGATCCTACATTGCTGGAACCAA 1870 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || || | || ||| | || |||||||| || || ||| ||| || | ||||| Sbjct 1871 CGGCTCCTCCAACGGAATTGTACCCATGCTTCGTGTGTTCAACAACACCGCCAGATATGT 1930 Query 104581 AAATCAAGCTGGGCGTCGA-AAGGGATCTA------TCGCAGTCTATCTTGAGCCATGGC 104633 | || ||||| | | ||| | || | || |||| || |||||||||| Sbjct 1931 CGACCA----GGGCGGCAACAAGCGTCCTGGTGCCTTTGCTATCTACCTGGAGCCATGGC 1986 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 | || ||| || | ||||||||||| | || ||||| || | || || | || Sbjct 1987 ATGCTGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTCCGTG 2046 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 ||| |||||||||| || || |||| ||| ||| | ||||||||| ||||||| ||| Sbjct 2047 CCCGTGATCTCTTCTTGGCCCTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGAAAAGA 2106 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 |||| ||||| | || || || || | |||| ||||| | | |||| | || | Sbjct 2107 ATGGCGATTGGACCCTATTCTGCCCCAATGAGGCTCCTGGCTTGGCTGATGTCTACGGAG 2166 Query 104814 AGGAGTTTGAAGC 104826 | |||||||| || Sbjct 2167 AAGAGTTTGAGGC 2179 >seq2158 Length=8959 Score = 118 bits (130), Expect = 1e-21 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 94790 |||||| ||||| | ||||| || |||||||| || ||| | |||| || || Sbjct 2344 AGTTCCATGTATCCGCAAGAAGGCCGATTGGGCCATCCGATGGATCCAAGATAAGAATTC 2285 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 |||| || |||| || | || ||||| ||| |||||||| |||||| || Sbjct 2284 CA---CCTTCGCCCAGCGCCTTGTTGCCTTTGCTGCTGTCGAGGGTATTTTCTTCAGCGG 2228 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 |||||| | | || | ||||| |||||||| ||||||||||| || ||| |||||| Sbjct 2227 CTCCTTCGCCTCCATCTTCTGGCTAAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTC 2168 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||| |||||||| |||||||| || || ||| || ||||| Sbjct 2167 CAACGAACTTATCTCCCGTGACGAAGGCCTACACACTGATTTTGC 2123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583236849853400