Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1409 120 9e-22 seq591 116 1e-20 seq1031 98.7 3e-15 seq2336 95.1 4e-14 seq1418 91.5 4e-13 seq1787 87.8 5e-12 >seq1409 Length=7126 Score = 120 bits (132), Expect = 9e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || ||||| || ||||| || || |||||||| || || || Sbjct 470 CATGCCTCCACGCAGACGCAGGACAAGGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTC 411 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || | || || || || ||||||||||| ||||| ||||||||||| || || Sbjct 410 GGACAGCGTCCTGCCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCTGG 351 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685 || || |||||||| ||||| || || | || || || || || | || | ||| || Sbjct 350 CGGGATGCCTTCTTTGTCCTGGATCTTGGTCTTCACGTTGTCGATGGTGTC-GCTGGATT 292 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 | || ||||| || | ||||| ||||| || ||||| || Sbjct 291 CGACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCAC 252 >seq591 Length=274 Score = 116 bits (128), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 349703 ATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaa 349762 || || || ||||||||||| || ||||| || || || ||||| | || || || Sbjct 2 ATCAACGAGCCCACTGCTGCTGCCATTGCCTACGGTCTCGATAAGAAGACCGAGGGTGAG 61 Query 349763 aaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTT 349822 || |||| || || ||| | ||||||||||| || ||||| || || || || | Sbjct 62 CGCAACGTTCTCATCTTCGATCTCGGTGGTGGTACCTTCGATGTCTCCCTCCTGACCATC 121 Query 349823 GAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGAT 349882 |||||||| || || ||||| || | ||||| ||||| || || | ||||| || || Sbjct 122 GAAGAGGGTATCTTCGAAGTCAAGTCCACTGCCGGTGACACTCACTTGGGTGGTGAGGAC 181 Query 349883 TTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG 349931 ||||| || |||||||| || || || || ||||| ||||| |||| Sbjct 182 TTTGACAACCGTCTCGTCAACCACTTCGTCAACGAATTCAAGCG-CAAG 229 >seq1031 Length=30153 Score = 98.7 bits (108), Expect = 3e-15 Identities = 106/140 (76%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505 ||||| | || || |||||||| | ||||| ||| || || | ||||||||||| Sbjct 23988 ATTTCCTTAAGACGAGGCACACCTAGCGTAACGTTC---TTTGAGGACACACCAGCAAAA 24044 Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565 ||||||||||| ||||| | || |||| ||||| ||||||||||| || || | || Sbjct 24045 TGGAAAGTATTGAGAGTCATCTGGGTAGCTGGCTCTCCAATTGACTGGGCAGCCAACACA 24104 Query 377566 CCAACCATTTCTCCAGGATT 377585 |||||||| || || ||||| Sbjct 24105 CCAACCATCTCACCGGGATT 24124 >seq2336 Length=13914 Score = 95.1 bits (104), Expect = 4e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 378175 ACAGTCATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATA 378234 ||||| | ||||||| | || ||| || | | ||| ||||||| |||||| ||| Sbjct 4538 ACAGTATTGTCATATCGAGTAGATAGATCCTCGAGAGATTTCATAAGTCTTCGAGACATA 4479 Query 378235 TAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCA 378294 || || |||| ||| ||||| || |||||||| | ||| |||||||| ||| || Sbjct 4478 TAGCCTGTTTCTGCAGTCTTAACGGCGGTATCAATCAGACCCTCACGACCAGACATAGCG 4419 Query 378295 TGGAAGAATAATTCAGTAGGAGTAAGTCCA 378324 ||||| | ||||| ||||||||||||||| Sbjct 4418 TGGAAAAGAAATTCTGTAGGAGTAAGTCCA 4389 >seq1418 Length=31151 Score = 91.5 bits (100), Expect = 4e-13 Identities = 234/356 (66%), Gaps = 3/356 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || | || | |||||||| | ||| |||||||| || || || || | Sbjct 4606 CCCGAGGAGGTCTCCGCCATGGTTTTGGGTAAGATGAAGGACATCGCCGAGAAGTACCTC 4665 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || || || || | ||||||| | ||||| || ||||| || ||||| |||| | Sbjct 4666 GGAGAGACTGTCAGCCATGCTGTCGTCACTGTCCCCGCCTACTTCAATGACAACCAGAGA 4725 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || |||||||| || | ||| || || | || || | | | |||| || Sbjct 4726 CAGGCCACCAAAGATGCCGGTACCATCGCCGGTCTTAACGTCATCCGTGTTGTTAACGAG 4785 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || ||||| ||||| ||||| || || ||||| | | ||||| || | || Sbjct 4786 CCAACTGCCGCAGCTATTGCCTACGGTCTTGACATGACTGGTGAC---GAGCGCCAGATC 4842 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || | | ||| | |||||||||||||| ||||| || || || | |||| |||| Sbjct 4843 ATTGTCTACGATCTCGGTGGTGGTACTTTCGATGTCTCTCTCCTCTCCATTGACAAGGGT 4902 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 || || || || || ||||| || || || | ||||| |||||||| || Sbjct 4903 GCCTTCGAGGTCTTGGCTACCGCTGGCGACACTCACTTGGGTGGTGAAGATTTCGA 4958 >seq1787 Length=27546 Score = 87.8 bits (96), Expect = 5e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 266266 ATAATTATACTCATTGTGAAATTCATCCAAGTACATTATTAGGTATTTTAGCATCTTGTA 266325 ||| || ||||||||||| ||||| || |||| ||||||| |||| || | | Sbjct 7475 ATACTTGGACTCATTGTGAGATTCACCCGAGTATGATATTAGGCATTTGTGCCAGTATCA 7416 Query 266326 TTCCATTTCCAGAACATAATCAAGCACCTCGTCTAACATATCAATGTGCAATGGGTAAAC 266385 |||| || || || ||||| ||| | || ||| ||||| |||| ||| |||||||||| Sbjct 7415 TTCCTTTCCCCGACCATAACCAATCTCCACGTAATACATACCAATCTGCCATGGGTAAAC 7356 Query 266386 AGGCTATGGGT 266396 | ||||||||| Sbjct 7355 AAGCTATGGGT 7345 Score = 86.0 bits (94), Expect = 2e-11 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 266973 ATCGGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCCT 267032 ||||| || || ||| | ||| ||||| ||||||||||||||||||| | || || Sbjct 6756 ATCGGAGACAAGTTTGCCTCTCGACACGGTCAAAAAGGTACCATTGGTATCAC-ATACCG 6698 Query 267033 GAA-GAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCA 267091 | | || |||||||||| | | ||| || | | |||||| | ||||| || || || Sbjct 6697 GCACGAGGATATGCCATTCACTAGAGAAGGCGTCACCCCTGATTTGATTATCAACCCCCA 6638 Query 267092 TGCTATTCCTAGTCGTATGACAATTG 267117 |||||||| |||||||||||||| Sbjct 6637 CGCTATTCCATCTCGTATGACAATTG 6612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515190624362855