Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1055 203 4e-47 seq2158 87.8 2e-12 >seq1055 Length=3912 Score = 203 bits (224), Expect = 4e-47 Identities = 396/583 (68%), Gaps = 4/583 (1%) Strand=Plus/Minus Query 79306 TCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCG 79365 || || |||||||| | || ||| || ||| | ||||| | ||| ||| || | Sbjct 2167 TCTCCGTAGACATCAGCCAAGCCAGGAGCCTCATTGGGGCAGAATAGGGTCCAATCGCCA 2108 Query 79366 TCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGG 79425 | ||| ||||| || |||||| | || || ||||||||||| |||||| || ||| Sbjct 2107 TTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAGGGCCAAGAAGAGATCACGG 2048 Query 79426 CAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCG 79485 ||| | || || | || |||||| || || || || || || | || || || Sbjct 2047 GCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAGACATCAGCA 1988 Query 79486 TGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACG 79545 ||||| |||||||| ||||| || || | ||| |||||| ||||||||||| ||| Sbjct 1987 TGCCATGGCTCCAGGTAGATAGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGGTCGACA 1928 Query 79546 TACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTC 79605 || | ||| ||||||||||| || || |||||||| || || |||| || | |||||| Sbjct 1927 TATCTGGCGGTGTTGTTGAACACACGAAGCATGGGTACAATTCCGTTGGAGGAGCCGTTG 1868 Query 79606 GTCCCGTTGATTCGTGTACCGCTCGCCCGAAT--GTTCGAGCAGTGGATTCCGATGCCCC 79663 || || || | ||| | || || || | | || || | ||||| || | Sbjct 1867 GTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGA--CGTTAAGGCCGATACCTC 1810 Query 79664 CGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGT 79723 ||| ||| ||||| || || ||| || || |||||||| || ||||| || Sbjct 1809 CGGCAGTCTTTGAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCGATACTGT 1750 Query 79724 CGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGA 79783 | |||||||| | | ||||||||| | ||| || || | || ||||| |||| Sbjct 1749 CCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCGGCATTGA 1690 Query 79784 AGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGA 79843 ||||||| || | || || |||||| | || ||| ||| |||| ||| || || | | Sbjct 1689 AGAGGGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGTTTCAATTA 1630 Query 79844 CGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 79886 | | | ||| ||||||||||| |||||||| || ||||| Sbjct 1629 CTTTCTCAACGTCCTCGCCGTGGATACCGACCGCAACTCGCAT 1587 Score = 197 bits (218), Expect = 2e-45 Identities = 396/587 (67%), Gaps = 0/587 (0%) Strand=Plus/Plus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 |||||||| |||||||| ||||| ||||| ||| | | ||| || |||||| | Sbjct 1587 ATGCGAGTTGCGGTCGGTATCCACGGCGAGGACGTTGAGAAAGTAATTGAAACATACAAT 1646 Query 19178 CTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAAC 19237 || ||| |||||| | |||||| || || | || ||||| ||||| ||||| || Sbjct 1647 CTCATGTCCCAGAAATACTTCACCCATGCCTCTCCCACCCTCTTCAATGCCGGAACCCCG 1706 Query 19238 AACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATC 19297 | ||||| ||| | ||| ||||| | | |||||||| ||||| || || || ||| Sbjct 1707 CAGCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGGAGGACAGTATCGAAGGTATC 1766 Query 19298 TACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC 19357 ||||| || || ||| || || ||||| ||| |||| |||||||| | || Sbjct 1767 TACGACACACTGAAGACCTGTGCTTTGATCTCAAAGACTGCCGGAGGTATCGGCCTTAAC 1826 Query 19358 TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGT 19417 | |||||| | | || | || ||| || ||||| || |||| Sbjct 1827 GTCCACCGTATCCGTGCCACCGGATCCTACATTGCTGGAACCAACGGCTCCTCCAACGGA 1886 Query 19418 ATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGC 19477 || || || ||||| || || ||||||||||| ||||| || ||| ||||||| ||| | Sbjct 1887 ATTGTACCCATGCTTCGTGTGTTCAACAACACCGCCAGATATGTCGACCAGGGCGGCAAC 1946 Query 19478 AAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTC 19537 || || || | || || |||||||| ||||||||||| || || ||| | || ||| Sbjct 1947 AAGCGTCCTGGTGCCTTTGCTATCTACCTGGAGCCATGGCATGCTGATGTCTTTGAGTTC 2006 Query 19538 CTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCC 19597 || || || ||| |||||| || | || || | || || || |||||| |||| Sbjct 2007 CTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTCCGTGCCCGTGATCTCTTCTTGGCC 2066 Query 19598 TTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATG 19657 |||||| ||| || | |||||| || ||||| ||| | | || ||| ||| | Sbjct 2067 CTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGAAAAGAATGGCGATTGGACCCTATTC 2126 Query 19658 TGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTT 19704 ||||| | || |||||| | | || |||||||| || | ||| Sbjct 2127 TGCCCCAATGAGGCTCCTGGCTTGGCTGATGTCTACGGAGAAGAGTT 2173 Score = 129 bits (142), Expect = 6e-25 Identities = 649/1019 (64%), Gaps = 39/1019 (4%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || || | |||||||||||| ||||||||||| |||||| ||| | ||||||||| Sbjct 3362 GTGCGGAGATAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATACTG 3303 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | ||| ||| |||| | | || | |||||||||||| || |||||||||||| Sbjct 3302 GTGATCTTTCCCATGGTCGGCTCTTTCAAGTGGATGTTGAGCGATTGAGACTGGTCGATG 3243 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 | || || || || || ||||| | | | | ||| | ||| ||||| | |||| Sbjct 3242 AAGGCGCCTCGATCAGCGGCCATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGTC 3183 Query 78370 CGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCG----CTTGTACGCTCCCACCGGC 78425 ||| | ||||| | ||| | |||||| || | ||| | | |||||| | Sbjct 3182 TTGTACAGAGCCTTGATATCTGCTGGGATGT-TAGGGATGTTTTGGATGGAACCACCGTC 3124 Query 78426 TCGCACAATTTCATTCTTAAT-TTGAGGGTTC-CAG--CGATTGATCTTCTGAAGATCCC 78481 | || ||||| || ||| || | ||| ||| | || || || || Sbjct 3123 AGCGATGATACGGTTCTTCATATTGTCGGACCACAGGCCGA--GGTCGACT--AGGTCTT 3068 Query 78482 GGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGT 78541 || || | |||| | | ||||||||| || || ||||| |||||||| Sbjct 3067 TGAGAAGCCACGGGTTGACGACTTGGAACTCGCCAGCAAGTACACGGCGTGAGTAGATGT 3008 Query 78542 TGGTCGTGTACGGCTCGAAAGC-CTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTC 78600 ||| ||||| || || ||||| ||||||| || | ||||| ||| ||| || Sbjct 3007 TGGAGGTGTAAGGTTC-AAAGCACTCGTTGAAGCCAAGAATCTGACTGGTGCTGGCAGTT 2949 Query 78601 GGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAGG 78660 |||||||| || | |||| || || | ||| ||| | |||||| | || || Sbjct 2948 GGCATGGGCGCAAGTAGTAAGCTGTTACGGACACCGTGCTTGGAGATCTCAGCTTTAAGA 2889 Query 78661 CC------GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCC 78714 || |||||| | || | | || | |||||| || ||||||||||||| Sbjct 2888 CCATCCCAGTCCCAGAGGTCGGTTGGCGTTACGTTCCACATATCGTATTGAAGGATACCC 2829 Query 78715 TCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT 78774 | || | || || |||| | | ||| | || || ||||||| || || || Sbjct 2828 TGAGAAACAGGGGAACCCTCATAGGAGGAGTATGGACCATCGACCTTGGCAAGCTCACAC 2769 Query 78775 GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTT---GAGCTCGCGC 78831 || || || || || ||||| | | ||||||||| |||| |||| | Sbjct 2768 GATGCGGTCAACGCAGCATGGTAAAGGGTCTCGAAGATTTGGGTGTTCAAAAGCTTG--- 2712 Query 78832 GCCTTGGTCTCGTCGAACG--AAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGA 78889 || | || |||||| | || | |||| | ||| |||| || || ||||||| Sbjct 2711 GCTTCGGGTGAGTCGAAGGGCAATCGAAGAGC--GAGGAAAGCATCAGCAAGTCCCTGGA 2654 Query 78890 CGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAA 78949 |||||| ||| || || || || || | ||||| ||| ||| | || |||||| Sbjct 2653 CGCCGACAGCAATGGGACGATGACGGAAATTGCTTCGTCGTGCCTCTTCAACCGGGTAGT 2594 Query 78950 AGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATT 79009 ||||| ||| |||| | ||||| ||| | |||||| |||| || || | | || Sbjct 2593 GGTTCCCATCTATGATCCTGTTCAAGTTTCTGACAACGACCTGAGTAACTTCATGGAGTT 2534 Query 79010 TGGCGAAATCAAAAT------GATTTCCTTTGATGAAAGTCGGTAGGCACAGCGATGCCA 79063 || | ||||| | | || | | | || || || ||| | ||||||| Sbjct 2533 TGCCAAAATCGTATTCACCGCGAACAGCATCCACAAAGGTGGGAAGGGCGATAGATGCCA 2474 Query 79064 GGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAG 79123 |||||| || || ||| || ||| | | || | |||||| ||||| | ||| | Sbjct 2473 AGTTGCAAACTGCAACCTCATCTGGGGCGGTATATTCAACGATTTCAGTGCAAAGATTTG 2414 Query 79124 A-CGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTA 79181 | | || ||| || || | |||||||||||||||||| ||| |||| |||||||| Sbjct 2413 AGCTAC-GGATAGTACCAAGGTTCTTCTGGTTGCTCTTTCGGTTGCAGGAATCCTTGTA 2356 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20619 TCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGG 20678 |||||| | |||| |||||| |||||||| | || | || | | ||||| | Sbjct 3167 TCAAGGCTCTGTACAAGACCGTGTGGGAAATTTCTCAACGTACTATTGTTCAGATGGCCG 3226 Query 20679 CCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGA 20738 | ||||| ||||||| |||||||||||| || |||||||| || | || | | |||| Sbjct 3227 CTGATCGAGGCGCCTTCATCGACCAGTCTCAATCGCTCAACATCCACTTGAAAGAGCCGA 3286 Query 20739 GCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCA 20798 | ||| ||| | | | ||||| | ||||||| | || |||||||| |||| Sbjct 3287 CCATGGGAAAGATCACCAGTATGCACTTCGCCGGCTGGAAGCTCGGTCTCAAGACCGGCA 3346 Query 20799 TGTACTATCTGCGGACC 20815 |||||||||| || ||| Sbjct 3347 TGTACTATCTCCGCACC 3363 >seq2158 Length=8959 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 || || || || || | || ||||| ||| || || || || |||||| ||||| || Sbjct 2280 TTCGCCCAGCGCCTTGTTGCCTTTGC-TGCTGTCGAGGGTATTTTCTTCAGCGGCTCCTT 2222 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 | | || |||||||| || |||||||| |||||||| || || | ||||||||||| Sbjct 2221 CGCCTCCATCTTCTGGCTAAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGA 2162 Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCA 60118 || || ||||| ||||| ||||| || Sbjct 2161 ACTTATCTCCCGTGACGAAGGCCTACA 2135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548502276200400