Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1055 150 2e-31 seq2158 93.3 5e-14 seq1168 91.5 2e-13 >seq1055 Length=3912 Score = 150 bits (166), Expect = 2e-31 Identities = 398/606 (66%), Gaps = 4/606 (1%) Strand=Plus/Plus Query 53179 GCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGT 53238 ||| ||| || | | ||||| || || | ||||||||||| || ||| | || Sbjct 1571 GCCACAGCATATGATAATGCGAGTTGCGGTCGGTATCCACGGCGAGGACGTTGAGAAAGT 1630 Query 53239 CCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTT 53298 ||| || ||| | | ||| ||| || ||||| || || ||| | || ||||| || Sbjct 1631 AATTGAAACATACAATCTCATGTCCCAGAAATACTTCACCCATGCCTCTCCCACCCTCTT 1690 Query 53299 CAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGA 53358 ||| || || || || || || ||| | ||||||||| | | |||||||| || Sbjct 1691 CAATGCCGGAACCCCGCAGCCGCAAATGGCTTCCTGCTTCCTCATTGACATGAAGGAGGA 1750 Query 53359 CTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGG 53418 | ||||| || |||||||| || || ||| ||||| ||||| ||| | || Sbjct 1751 CAGTATCGAAGGTATCTACGACACACTGAAGACCTGTGCTTTGATCTCAAAGACTGCCGG 1810 Query 53419 TGGTATCGGTATCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACG 53476 |||||||| | || || | ||| |||||| | ||| | || || || Sbjct 1811 AGGTATCGGCCTTAACG--TCCACCGTATCCGTGCCACCGGATCCTACATTGCTGGAACC 1868 Query 53477 AACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTAC 53536 |||||| | || | ||||| || || ||||| || || ||||||||||| ||| | || Sbjct 1869 AACGGCTCCTCCAACGGAATTGTACCCATGCTTCGTGTGTTCAACAACACCGCCAGATAT 1928 Query 53537 GTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCAC 53596 ||| ||||||| || ||||| || | || || |||||||| ||||| ||||| Sbjct 1929 GTCGACCAGGGCGGCAACAAGCGTCCTGGTGCCTTTGCTATCTACCTGGAGCCATGGCAT 1988 Query 53597 GCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC 53656 || || | | ||||| || || || || ||| || || | ||||| | || | Sbjct 1989 GCTGATGTCTTTGAGTTCCTTGACCTCCGCAAGAACCATGGAAAGGAAGAAGTCCGTGCC 2048 Query 53657 CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGAC 53716 ||||| || || || ||||||| ||| || | |||||| | || || ||| | Sbjct 2049 CGTGATCTCTTCTTGGCCCTGTGGACTCCTGATTTGTTCATGAAGCGAGTTGAAAAGAAT 2108 Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAG 53776 | || ||| ||| | ||||| || ||| || ||| | | ||||||||| || Sbjct 2109 GGCGATTGGACCCTATTCTGCCCCAATGAGGCTCCTGGCTTGGCTGATGTCTACGGAGAA 2168 Query 53777 GAGTTT 53782 |||||| Sbjct 2169 GAGTTT 2174 >seq2158 Length=8959 Score = 93.3 bits (102), Expect = 5e-14 Identities = 109/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 |||||| || | | || | ||| || || || | || || ||||| || |||||||| Sbjct 2140 GCCTTCGTCACGGGAGATAAGTTCGTTGGAGAAGGTGAGTCCGGGCATGAGACCACGCTT 2199 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||| | ||| ||||||| |||||| || |||||||| || || |||||| ||||| Sbjct 2200 CTTTAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAAATACCCTCGACAGCAGCAAA 2259 Query 74888 GGCGACAAGGCGTTGCGCGAACGGTG 74913 ||| |||||||| || ||||| |||| Sbjct 2260 GGCAACAAGGCGCTGGGCGAA-GGTG 2284 >seq1168 Length=20248 Score = 91.5 bits (100), Expect = 2e-13 Identities = 194/287 (68%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 118016 CCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGT 118075 ||||||||||| |||||| ||||| ||| ||||| ||||||| |||||||||| Sbjct 9453 CCCTTGATATGACTACCGTCATGATCCTGATCAGTCATAATCATCAAATGGCCGTACCGA 9394 Query 118076 AAATCTC-----TCAGGGAGTTATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAA 118130 | ||| |||| |||| |||| ||| || | || | || ||||| | Sbjct 9393 AGGCCTCGAGTATCAG-----TATATTCCTTTTTATGCTGTAAGCCAATGAAATTTTTGA 9339 Query 118131 GGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCG 118190 ||| | ||| |||| | || | || | || || || || ||||||||| | Sbjct 9338 TGTTCTGGATTTCAGCATTCTTCGAGATTTGGTCTACGGAAGCATCTCGAACGTTGAGAA 9279 Query 118191 GCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAAC-GCTCAAGCCGGCA 118249 | || || || |||||||| || ||||| |||| | |||||||| |||| |||||| Sbjct 9278 GTTTTCCGCGAAGTGGAAAGACTCCAAAAAGGTCAGGTCCCACAACTGCTC-GGCCGGCC 9220 Query 118250 ATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCA 118296 ||||| | |||| || || ||||| || || | || ||||| || Sbjct 9219 ATAGCCAAACCCTTGGCGGAATCACCTTCAGTTAGGATTAGAGTACA 9173 Score = 87.8 bits (96), Expect = 2e-12 Identities = 202/298 (68%), Gaps = 6/298 (2%) Strand=Plus/Minus Query 152770 TTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAGA 152829 |||| || |||||||||||| || |||||| ||||| || ||||| ||||||| | Sbjct 9465 TTGATGAGCAAGCCCTTGATATGACTACCGTCATGATCCTGATCAGTCATAATCATCAAA 9406 Query 152830 CGACCGTAGCGCAGGTCACGTAGTGACCCGTAGA--CCTTTCCATGTTGAAGCCCGAGGA 152887 | ||||| || ||| | || ||| | | ||| | ||||| ||| || | || | || Sbjct 9405 TGGCCGTACCGAAGGCCTCG-AGT-ATCAGTATATTCCTTTTTATGCTGTAAGCCAATGA 9348 Query 152888 TCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAA 152947 ||||||| ||| | ||| |||| | | | || | || | ||||| |||| Sbjct 9347 AATTTTTGATGTTCTGGATTTCAGCATTCTTCGAGATTTGGTCTACGGAAGCATCTCGAA 9288 Query 152948 CATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTACAAC-GCTC 153006 | ||| | | ||||| || |||||||| || || || || | || ||||| |||| Sbjct 9287 CGTTGAGAAGTTTTCCGCGAAGTGGAAAGACTCCAAAAAGGTCAGGTCCCACAACTGCTC 9228 Query 153007 AGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGT 153064 | ||||| ||||| | | || || || ||||| || || | || || ||||||| Sbjct 9227 -GGCCGGCCATAGCCAAACCCTTGGCGGAATCACCTTCAGTTAGGATTAGAGTACAGT 9171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547193529943000