Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1409 140 4e-28 seq2769 111 2e-19 seq1055 89.7 6e-13 seq2158 82.4 9e-11 >seq1409 Length=7126 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 || || || || ||||||||||| || ||||||||||| || || | || | ||| | Sbjct 252 GTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCATCGAC 311 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || ||||| | || || |||||||| || || || || ||||||||||| ||||| || Sbjct 312 AACGTGAAGACCAAGATCCAGGACAAAGAAGGCATCCCGCCAGACCAGCAACGTCTCATC 371 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || ||||| || || |||||||| | | || || | ||||| || | ||||||||| Sbjct 372 TTCGCTGGAAAACAGCTCGAGGACGGCAGGACGCTGTCCGACTACAACATTCAAAAGGAA 431 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || || ||| ||||||| || || || Sbjct 432 TCAACTCTCCACCTTGTCCTGCGTCTGCGTGGAGG 466 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| ||||| ||||| || || || || ||||| || || | Sbjct 468 ATGCAGATCTTCGTCAAGACACTTACGGGCAAAACCATCACGCTGGAGGTAGAATCCAGC 527 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || ||||||||||| || || || ||||||||| Sbjct 528 GACACGATAGACAACGTCAAGACAAAGATCCAGGACAAGGAAGGTATCCCACCAGACCAG 587 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || || || |||||||| | || || || | || || || Sbjct 588 CAGCGTCTCATCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACGCTGTCTGATTACAAC 647 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 |||| ||||| ||| | ||| | ||| |||| Sbjct 648 ATCCAGAAGGAGAGCACGTTGCATTTGGTCCTGCG 682 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||| | || || || ||||||||||| || || |||||||||||||| || || || || Sbjct 23 AAGACCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAGCAGCGCCTGATCTTCGCA 82 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || || ||||||||||| | || || || | |||||||| |||| ||||| ||||| Sbjct 83 GGAAAACAACTCGAGGACGGCCGGACGCTGTCCGACTATAACATCCAGAAGGAGTCCACC 142 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || ||| | ||||| || ||||| Sbjct 143 CTTCACCTCGTCCTTCGTCTCCGTGGTGG 171 >seq2769 Length=18169 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||||||||| ||||||||||||||||| || || || || || || |||||| Sbjct 11101 GACAAGGAGGGAATTCCCCCAGACCAGCAGCGTCTGATCTTCGCAGGAAAACAGCTCGAG 11160 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | ||||| || | ||||| || | || ||||| ||||| ||||| || || | Sbjct 11161 GACGGGCGTACTCTTTCTGACTACAACATTCAGAAGGAGTCCACCCTTCACCTCGTGCTC 11220 Query 27619 CGTCTTCGCGGTGG 27632 ||||| || ||||| Sbjct 11221 CGTCTCCGTGGTGG 11234 >seq1055 Length=3912 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || |||||||||||||| |||||||| || |||||||||| | ||||||| Sbjct 3362 GTGCGGAGATAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATACTG 3303 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | || || | | || | |||||| || || |||||||| |||| Sbjct 3302 GTGATCTTTCCCATGGTCGGCTCTTTCAAGTGGATGTTGAGCGATTGAGACTGGTCGATG 3243 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 || || || ||||| || ||||| | || ||| | ||| | ||||||||| || || Sbjct 3242 AAGGCGCCTCGATCAGCGGCCATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGT 3184 Score = 87.8 bits (96), Expect = 2e-12 Identities = 363/568 (64%), Gaps = 10/568 (2%) Strand=Plus/Minus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 |||||| |||| || | ||| |||| || | || || ||| | | | ||| || Sbjct 2853 CCACATATCGTATTGAAGGATACCCTGAGAAACAGGGGAACCCTCATAGGAGGAGTATGG 2794 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 || || |||||| ||||||||||| | | | || || || |||| | ||| || Sbjct 2793 ACCATCGACCTTGGCAAGCTCACACGATGCGGTCAACGCAGCATGGTAAAGGGTCTCGAA 2734 Query 80661 GACGCCCTTGTTCACACCGCGCGCCTGTGGGT-CGTCGAACGACAAGCCCATCATCATGA 80719 || |||||| | || | || |||| |||||| | ||| | | | || Sbjct 2733 GATTTGGGTGTTCA-AAAGCTTGGCTTCGGGTGAGTCGAAGGGCAATCGAAGAGCGAGGA 2675 Query 80720 ACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCT 80779 | | ||||| || ||||| ||||||| || || || || || || || ||| | Sbjct 2674 AAGCATCAGCAAGTCCCTGGACGCCGACAGCAATGGGACGATGACGGAAATTGCTTCG-T 2616 Query 80780 CG-GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACA 80838 || ||||| || ||||| ||| ||| |||| | ||||| ||| | ||| Sbjct 2615 CGTGCCTCTTCAACCGGGTAGTGGTTCCCATCTATGATCCTGTTCAAGTTTCTGACAACG 2556 Query 80839 ACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATT------GGTTCCCCTTCACAAAT 80892 ||| | ||||| ||||| ||||| ||| ||| ||| | | | |||||| Sbjct 2555 ACCTGAGTAACTTCATGGAGTTTGCCAAAATCGTATTCACCGCGAACAGCATCCACAAAG 2496 Query 80893 GCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCG 80952 | |||||| | || |||| ||||| || || ||||| || | | ||| | || Sbjct 2495 GTGGGAAGGGCGATAGATGCCAAGTTGCAAACTGCAACCTCATCTGGGGCGGTATATTCA 2436 Query 80953 ACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTG 81012 |||||||| ||||| | ||| || || ||||| ||||| |||||||| ||| Sbjct 2435 ACGATTTCAGTGCAAAGATTTGAGCTACGGATAGTACCAAGGTTCTTCTGGTTGCTCTTT 2376 Query 81013 GCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGG 81072 |||||| | |||||||| ||| | ||| | || ||||| ||| | || || Sbjct 2375 CGGTTGCAGGAATCCTTGTAAAGCATAAAAGGGTTTCCAGTCTCCGTCTGGGCCTCAAGA 2316 Query 81073 ATGGCGTCCCAAATCTCGCGCGCCTTGA 81100 ||||||| ||| | || | ||||||| Sbjct 2315 ATGGCGTACCATAGCTTCTGGGCCTTGA 2288 >seq2158 Length=8959 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/232 (69%), Gaps = 7/232 (3%) Strand=Plus/Minus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGATGAATCGTGGG---TCGTCGTTTGGTCAGCGT 64719 || ||||| || ||||||||||| ||||| | | | || | || | ||||| Sbjct 2328 AAGAAGGCCGATTGGGCCATCCGATGGATCCAAGATAAGAATTCCACCTTCGCCCAGCGC 2269 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 || | || ||||| ||| || || |||||||| || || ||| || || ||| Sbjct 2268 CTTGTTGCCTTTGCTGCTGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCATCTTC 2209 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 |||||||| ||||| || || ||||| || || | || || ||||| || ||||| || Sbjct 2208 TGGCTAAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTTATCTCCCGT 2149 Query 64840 GACGAGGGGCTCCACCAAGAATTTGCGGTTACC--CTGTTCAGCCACCTCAA 64889 ||||| || || ||| || ||||| | || |||||| |||||||| Sbjct 2148 GACGAAGGCCTACACACTGATTTTGC--CTGCCTTCTGTTCTCTCACCTCAA 2099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570286981629200