Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1409 159 8e-34 seq2769 93.3 1e-13 >seq1409 Length=7126 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||||||||| ||||| || || ||||| ||||| || || | || Sbjct 464 TCCACGCAGACGCAGGACAAGGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCGGACAG 405 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||||| || || || ||||| || || |||||||| || ||||| ||||| || || | Sbjct 404 CGTCCTGCCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCTGGCGGGAT 345 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||| |||||||||||||| |||||||| ||||||||||| | ||| ||||| Sbjct 344 GCCTTCTTTGTCCTGGATCTTGGTCTTCACGTTGTCGATGGTGTCGCTGGATTCGACCTC 285 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 |||||||| ||||| || || ||||| || || Sbjct 284 AAGAGTGATGGTCTTGCCGGTCAGAGTTTTCAC 252 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 210923 CTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAA 210982 ||| || |||||||| ||||| | || |||| || || || ||||| || ||||| || Sbjct 659 CTCCTTCTGGATGTTGTAATCAGACAGCGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAA 600 Query 210983 GATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTT 211042 ||| || || || ||||| || || | ||||||||||||||||||||| || ||||| Sbjct 599 GATGAGACGCTGCTGGTCTGGTGGGATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTT 540 Query 211043 TTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 || || ||||| | ||| ||||| || ||||| || || ||||| || ||||| || Sbjct 539 GTCTATCGTGTCGCTGGATTCTACCTCCAGCGTGATGGTTTTGCCCGTAAGTGTCTTGAC 480 Query 211103 AAACACCTGCAT 211114 || | |||||| Sbjct 479 GAAGATCTGCAT 468 Score = 125 bits (138), Expect = 2e-23 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| |||||||| || ||||||||||| || | || |||| || || Sbjct 156 AGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGACAGCGTCCGGCCGTCC 97 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || ||||||||||| ||||| || ||||| || || | || |||||||| Sbjct 96 TCGAGTTGTTTTCCTGCGAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCT 37 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 |||||||| || ||||| ||||||||||| Sbjct 36 TGGATCTTGGTCTTGACGTTGTCGATGGTGTC 5 >seq2769 Length=18169 Score = 93.3 bits (102), Expect = 1e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||| |||||||| || || ||||| || || | ||| || | || || Sbjct 11219 AGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGCCCGTCC 11160 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||| || ||||||||||| || || || ||||| || |||| ||| |||||||| Sbjct 11159 TCGAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTC 11101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159103212379025