Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1409 167 6e-36 seq2205 109 1e-18 seq641 89.7 1e-12 >seq1409 Length=7126 Score = 167 bits (184), Expect = 6e-36 Identities = 161/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||||||||||||||| ||||| ||||| | ||||| |||| || || Sbjct 461 ACGCAGACGCAGGACAAGGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCGGACAGCGT 402 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || || || ||||| || ||||||||||| || ||||| ||||| ||||| || || Sbjct 401 CCTGCCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCC 342 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||| |||||||| |||||| ||||||||||| || ||| || || | Sbjct 341 TTCTTTGTCCTGGATCTTGGTCTTCACGTTGTCGATGGTGTCGCTGGATTCGACCTCAAG 282 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| |||| |||||| Sbjct 281 AGTGATGGTCTTGCCGGTCAGAGTTTT 255 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225523 TCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAG 225582 || || |||| |||||||| | || || | || || || ||||| || || || ||| Sbjct 658 TCCTTCTGGATGTTGTAATCAGACAGCGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAG 599 Query 225583 ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCT 225642 || || || || ||||| || || |||||||||||||| ||||||||| ||| || Sbjct 598 ATGAGACGCTGCTGGTCTGGTGGGATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTTG 539 Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATG 225702 || || ||||| || ||| || || | |||||| || |||||||| | || || | | Sbjct 538 TCTATCGTGTCGCTGGATTCTACCTCCAGCGTGATGGTTTTGCCCGTAAGTGTCTTGACG 479 Query 225703 AACACTTGCAT 225713 || | ||||| Sbjct 478 AAGATCTGCAT 468 Score = 95.1 bits (104), Expect = 3e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| || || |||| || || | || || Sbjct 156 AGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGACAGCGTCCGGCCGTCC 97 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || |||||||| || || || ||||| || || || || ||||||||| Sbjct 96 TCGAGTTGTTTTCCTGCGAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCT 37 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||| ||| || ||||||||||| Sbjct 36 TGGATCTTGGTCTTGACGTTGTCGATGGTGTC 5 >seq2205 Length=24276 Score = 109 bits (120), Expect = 1e-18 Identities = 191/275 (69%), Gaps = 5/275 (2%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| |||||| | || |||| ||||| ||| | | ||||| || || | | Sbjct 12638 AACATTATATCTTATGTTTGCATTATTTTCAGGTTTGGTTGGTACAGCTTTCTCAGTTTT 12697 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAG-TGGTAATAGCCAACTTT 7558 || || || || ||| | ||||| ||| ||| ||| || || |||| ||| | | Sbjct 12698 AATTAGATTGGAGTTATCAGCTCCTGGTGTACAA-TATATAGCTGATAAT---CAATTAT 12753 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | || ||||||||| || ||||| || | ||||| || ||| | |||||||| | | Sbjct 12754 ATAATAGTATTATTACAGCTCATGCTATTTTAATGATATTTTTTATGGTTATGCCTGCTT 12813 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 | ||||| ||||| || |||| || | || ||| | | |||| ||| |||||||| | Sbjct 12814 TAATAGGTGGTTTTGGTAATTTTTTATTACCATTATTAGTGGGTGGTCCAGATATGGCAT 12873 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713 |||| || | || |||||||||||||||||| || Sbjct 12874 TTCCTAGATTAAATAATATAAGTTTTTGATTATTA 12908 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/105 (81%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| |||||||| || ||||||||||||||||| || | |||||||| || || || | Sbjct 13319 TTCTGGATGACCGAAGAATCAGAATAAATGTTGGTATAAAATAGGATCACCACCACCAGC 13260 Query 370732 TGGATCAAA-AAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 | ||||| |||| | ||||||||||||||||| ||||| |||| Sbjct 13259 TAATTCAAAGAAAGAT-GTATTAAAATTTCTATCTGTTAATAACA 13216 >seq641 Length=230 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794 |||||||| ||||| ||||| ||| ||||||||||||| |||| |||||| | | | Sbjct 195 TTGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCGCCGCTTGTGCGGGCC 136 Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 |||||| || |||||||||| | ||||||| |||| | | |||| || Sbjct 135 CCCGTCAATTCCTTTGAGTTTCAGGCTTGCGGCCGTACTCCCCAGGCGG 87 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192481007479790