Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1055 257 2e-63 >seq1055 Length=3912 Score = 257 bits (284), Expect = 2e-63 Identities = 595/894 (67%), Gaps = 2/894 (0%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 ||||| || ||||| | |||||| |||| ||||| ||||| ||||| | | | | Sbjct 2176 TCAAACTCTTCTCCGTAGACATCAGCCAAGCCAGGAGCCTCATTGGGGCAGAATAGGGTC 2117 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || || |||| | | |||||| ||||| || | |||||| |||| || || | || Sbjct 2116 CAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAGGGCCAAGAAG 2057 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 ||||| |||| | |||||| ||||| ||||| || || || ||||| | Sbjct 2056 AGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAG 1997 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 | ||||| ||||||||| || || || || || | | ||||| || || || || ||| Sbjct 1996 ACATCAGCATGCCATGGCTCCAGGTAGATAGCAAAGGCACCAGGACGCTTGTTGCCGCCC 1937 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 || || | ||||||||||||||| || | || | | ||| || | ||| ||||| || Sbjct 1936 TGGTCGACATATCTGGCGGTGTTGTTGAACACACGAAGCATGGGTACAATTCCGTTGGAG 1877 Query 78225 GTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCT 78284 | || || ||||||| ||| || ||| | || || ||| | | | || Sbjct 1876 GAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGGCCG 1817 Query 78285 ATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCT 78344 || ||||| || |||| || || | ||| || |||| ||| ||||||||||| || Sbjct 1816 ATACCTCCGGCAGTCTTTGAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCG 1757 Query 78345 ATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 78404 |||||||| ||| |||||| || || || ||| || |||||| | || ||||| Sbjct 1756 ATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCG 1697 Query 78405 GCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTT 78464 ||||| || | || ||||| ||||| || || |||| | || | |||||||||||| Sbjct 1696 GCATTGAAGAGGGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGTT 1637 Query 78465 TCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGC 78524 ||||| || || | |||| || || || ||||| || ||||| | ||||||| Sbjct 1636 TCAATTACTTTCTCAACGTCCTCGCCGTGGATACCGACCGCAACTCGCATTATCATATGC 1577 Query 78525 TGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTA 78584 || || | ||| | ||| || || | || |||||| |||| | || || Sbjct 1576 TGTGGCCGTTCGGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCTTG 1517 Query 78585 AAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCT 78644 || || || || | ||| |||||| | ||||| | ||| | || || |||| || Sbjct 1516 AAGCCGAAGTACTGGTAGTTAAAGTCACGGTCGTACACGATAGCCGAGTTGAGTTCTTCA 1457 Query 78645 TTGTATTTGGTAACAATATCCATGACAGTAGTTGAAATAATAGGAGATCGTACACCATTT 78704 | ||| | || || ||| | | || || || |||| | || || Sbjct 1456 GCATGTTTCATGACGATCTCCCGGGTCTTCTCAGATATCATGGGAGCAGGCCGGCCGTTC 1397 Query 78705 TTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTA-AATAGtttttttGTTTC 78763 || || || ||||||| | | | || || || || || | ||| | || || |||| Sbjct 1396 TTTGGGTTGACATAGTGATAGAGGTCATCTATAAC-GGACGAGAATTGCTTCTTGGTTTG 1338 Query 78764 CTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATG 78817 |||||| || || || || |||||||||||||| ||||| ||||| || ||||| Sbjct 1337 CTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTGGATG 1284 Score = 89.7 bits (98), Expect = 7e-13 Identities = 199/298 (67%), Gaps = 13/298 (4%) Strand=Plus/Minus Query 76781 TGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAG 76840 ||| || || || |||| ||| || | | || || ||||||||||| || || || || Sbjct 3393 TGTGAATTGGATGGGAGCAGACGCAGCCATGGTGCGGAGATAGTACATGCCGGTCTTGAG 3334 Query 76841 ACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCT-- 76898 ||| || |||| ||| ||| ||||| || || | | | | | | |||||| Sbjct 3333 ACCGAGCTTCCAGCCGGCGAAGTGCATACTGGTGATCT-----TTCCCATGGTCGGCTCT 3279 Query 76899 ---ATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATT 76955 | || || || | ||| ||| || |||||||| || |||| |||||| ||||| Sbjct 3278 TTCAAGTGGATGTTGAGCGATTGAGACTGGTCGATGAAGGCGCCTCGATCAGCGGCCATC 3219 Query 76956 TTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCT 77015 | | ||| || ||||| ||||||||| | || ||| | | |||||||| || Sbjct 3218 TGAACAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGAGCCTTGATATCTGCT 3159 Query 77016 GGAAGGTTTG---TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATAT 77070 || | ||| | | ||||| ||||||||||| || | || || ||||| |||| Sbjct 3158 GGGATGTTAGGGATGTTTTGGATGGAACCACCGTCAGCGATGATACGGTTCTTCATAT 3101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694640275162400