Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1055 289 4e-73 seq2158 86.0 9e-12 >seq1055 Length=3912 Score = 289 bits (320), Expect = 4e-73 Identities = 600/893 (67%), Gaps = 0/893 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||| || ||||| | |||||| |||| |||||| ||||| || || | | | | Sbjct 2176 TCAAACTCTTCTCCGTAGACATCAGCCAAGCCAGGAGCCTCATTGGGGCAGAATAGGGTC 2117 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || || |||| | | ||| || ||||| || | |||||| |||| || || | || Sbjct 2116 CAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAGGGCCAAGAAG 2057 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 ||||| |||| | |||||| ||||| ||||| || || |||||||| | Sbjct 2056 AGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAG 1997 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 | ||||| ||||||||| || || || || || | |||| || || || || || ||| Sbjct 1996 ACATCAGCATGCCATGGCTCCAGGTAGATAGCAAAGGCACCAGGACGCTTGTTGCCGCCC 1937 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 || || | ||||||||| ||||| || | || | | ||| || | ||| ||||| || Sbjct 1936 TGGTCGACATATCTGGCGGTGTTGTTGAACACACGAAGCATGGGTACAATTCCGTTGGAG 1877 Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCT 76879 | || || ||||||| ||| || ||| ||||| ||| | ||||| Sbjct 1876 GAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGGCCG 1817 Query 76880 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCT 76939 || ||||| || | || ||||| | ||||||| |||| |||||| ||||| || || Sbjct 1816 ATACCTCCGGCAGTCTTTGAGATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCG 1757 Query 76940 ATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 76999 ||||| || ||| |||||| || || || ||| || |||||| | || ||||| Sbjct 1756 ATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCG 1697 Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT 77059 ||||| || | || ||||| ||||| ||||| |||| | || | |||||||||||| Sbjct 1696 GCATTGAAGAGGGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGTT 1637 Query 77060 TCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGC 77119 ||||| ||| || | ||| || || || || || || ||||| | ||||||| Sbjct 1636 TCAATTACTTTCTCAACGTCCTCGCCGTGGATACCGACCGCAACTCGCATTATCATATGC 1577 Query 77120 TGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTA 77179 || || ||||| || ||| || || | || |||||| |||| | || || Sbjct 1576 TGTGGCCGTTCGGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCTTG 1517 Query 77180 AAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCC 77239 || || || || | ||| |||||| | ||||| | ||| |||| || |||| || Sbjct 1516 AAGCCGAAGTACTGGTAGTTAAAGTCACGGTCGTACACGATAGCCGAGTTGAGTTCTTCA 1457 Query 77240 TTATATTTGGTAACAATATCCATGACAGTGGTAGAAATAATTGGAGATCGTATTCCATTT 77299 || ||| | || || ||| | | ||| || || |||| | || || Sbjct 1456 GCATGTTTCATGACGATCTCCCGGGTCTTCTCAGATATCATGGGAGCAGGCCGGCCGTTC 1397 Query 77300 TTAGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCC 77359 || || || ||||||| | | | ||| || || ||| ||| | || || |||| | Sbjct 1396 TTTGGGTTGACATAGTGATAGAGGTCATCTATAACGGACGAGAATTGCTTCTTGGTTTGC 1337 Query 77360 TTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATG 77412 ||||| || ||||| || |||||||| ||||| ||||| |||||||| ||||| Sbjct 1336 TTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTGGATG 1284 Score = 111 bits (122), Expect = 2e-19 Identities = 674/1073 (63%), Gaps = 21/1073 (2%) Strand=Plus/Minus Query 75377 GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 75436 ||||| || ||||||| || || | | || || ||||||||||| || || || ||| Sbjct 3392 GTGAATTGGATGGGAGCAGACGCAGCCATGGTGCGGAGATAGTACATGCCGGTCTTGAGA 3333 Query 75437 CCCAGACTCCATCCGTAGAAATGCATGCTTGTTA-GTTTGGAATAACTCGGATCGGCTAT 75495 || || |||| ||| ||| ||||| || || | ||| || |||| || | Sbjct 3332 CCGAGCTTCCAGCCGGCGAAGTGCATACTGGTGATCTTTCCCAT-GGTCGGCTCTTTCAA 3274 Query 75496 ATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTAT 75555 || || || | ||| ||| || |||||||| || |||| |||||| ||||| | | Sbjct 3273 GTGGATGTTGAGCGATTGAGACTGGTCGATGAAGGCGCCTCGATCAGCGGCCATCTGAAC 3214 Query 75556 AATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAG 75615 ||| || ||||| ||||||||| | || ||| | | |||||||| |||| | Sbjct 3213 AATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGAGCCTTGATATCTGCTGGGAT 3154 Query 75616 ATTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATT 75672 || | | ||||| ||||| || || |||| || || ||||| || | || Sbjct 3153 GTTAGGGATGTTTTGGATGGAACCACCGTCAGCGATGATACGGTTCTTCATATTGTCGGA 3094 Query 75673 CCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCC 75732 ||||| ||| || || | || || || || || | ||| || || || Sbjct 3093 CCACAGGCCGAGGTCGACTAGGTCTTTGAGAAGCCACGGGTTGACGACTTGGAACTCGCC 3034 Query 75733 AGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCC 75792 || | ||| | || | ||| || || ||| || ||||| | | || ||| || Sbjct 3033 AGCAAGTACACGGCGTGAGTAGATGTTGGAGGTGTAAGGTTCAAAGCACTCGTTGAAGCC 2974 Query 75793 CAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACC 75852 | ||| ||| || ||||| ||||| || || | | ||| || || | || ||| Sbjct 2973 AAGAATCTGACTGGTGCTGGCAGTTGGCATGGGCGCAAGTAGTAAGCTGTTACGGACACC 2914 Query 75853 ATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATC 75912 || | ||| | | |||| ||| | ||| ||||| || || | ||| || | Sbjct 2913 GTGCTTGGAGATCTCAGCTTTAAGACCATCCCAGTCCCAGAGGTCGGTTGGCGTTACGTT 2854 Query 75913 CCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGT 75972 ||| | ||||||||| || || || | | || || || | ||| | ||| | Sbjct 2853 CCACATATCGTATTGAAGGATACCCTGAGAAACAGGGGAACCCTCATAGGAGGAGTATGG 2794 Query 75973 CCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAA 76032 || || | || || || || || |||||| | | |||| || ||||| Sbjct 2793 ACCATCGACCTTGGCAAGCTCACACGATGCGGTCAACGCAGCATGGTAAAGGGTCTCGAA 2734 Query 76033 AATCTTCTTATT-AAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAG-AATA 76090 || | | || || | |||| ||||| | || |||| ||| || || | Sbjct 2733 GATTTGGGTGTTCAAAAGCTTG-GCTTCGGGTGAGTC-GAAGGGCAATCGAAGAGCGAGG 2676 Query 76091 AATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATT 76150 || ||||| || |||||||| || || | | |||| || | ||| | |||| | Sbjct 2675 AAAGCATCAGCAAGTCCCTGGACGCCGACAGCAATGGGACGATGACGGAAATTGCTTCGT 2616 Query 76151 TCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACT 76210 || ||| || ||||| | || |||||| || | || | ||||||||||| Sbjct 2615 CGTGCCTCTTCAACCGGGTAGTGGTTCCCATCTATGATCCTGTTCAAGTTTCTGACAACG 2556 Query 76211 ACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTC------CATCTATCACAAAC 76264 || | | || || | |||||| |||||| ||| | || | |||||| Sbjct 2555 ACCTGAGTAACTTCATGGAGTTTGCCAAAATCGTATTCACCGCGAACAGCATCCACAAAG 2496 Query 76265 ATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGT 76324 | ||| || |||||||| | || ||||| || ||||||| | || ||||| Sbjct 2495 GTGGGAAGGGCGATAGATGCCAAGTTGCAAACTGCAACCTCATCTGGGGCGGTATATTCA 2436 Query 76325 ATTATCTCCGTGCATAGATT---ACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTC 76381 | || || ||||| ||||| |||| |||||| ||||| || | ||||||||| Sbjct 2435 ACGATTTCAGTGCAAAGATTTGAGCTAC---GGATAGTACCAAGGTTCTTCTGGTTGCTC 2379 Query 76382 TTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTG 76434 ||| ||| || || ||||| ||||| | ||| || ||||||| || |||| Sbjct 2378 TTTCGGTTGCAGGAATCCTTGTAAAGCATAAAAGGGTTTCCAGTCTCCGTCTG 2326 >seq2158 Length=8959 Score = 86.0 bits (94), Expect = 9e-12 Identities = 222/335 (66%), Gaps = 5/335 (1%) Strand=Plus/Plus Query 46850 TTGTTTCTATAGCATTAAAGAGAAAGttttttt-CATCACTATCTTTAACATATGTATCT 46908 |||| || ||||| | ||| || || || || | || | || |||| |||||| || Sbjct 2400 TTGTGTCAATAGCTTCAAAAAGGTAGGTTCGTTGCTTCTGT-TCCTTAATATATGTGTCG 2458 Query 46909 ATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAA 46968 || | ||| || |||| || ||||||||||| || ||||| || || || || Sbjct 2459 ATGAGGAGAGAGTATGTTTCGGAGTGAATGTTTTCCATCATGATCTGGAAGCCATAGAAG 2518 Query 46969 CATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACT 47028 || | ||||| | | ||| || || | | || || ||| | ||||| || || Sbjct 2519 CACCGGGCTTCCGGTACCTGGACTTCGTTGCTGAAACGCTCAAGGAGGTTCTCGTTAACG 2578 Query 47029 ATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTA 47088 || ||||| || || || || ||||| ||||| || || || ||||||| | Sbjct 2579 ATGCCATCGGAGGCGGCGAAGAAAGCCAAGACATGGGAGATGAAGAATCGTTCATCGTCA 2638 Query 47089 GTCAG---TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAG 47145 | || || |||||||| | ||||| || || | ||| | ||||| || |||||| Sbjct 2639 TTGAGCCTGTTGTTCCAGTCGTGAATATCCTTGGAGAGATCGATCTCTTCGGCAGTCCAG 2698 Query 47146 AATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 || || || || || || || ||||| | ||| || Sbjct 2699 AAAGAAGCTTCAGCCTTCTTGTACATTTGCCAGAT 2733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712905125131200