Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1409 163 6e-35 seq2769 96.9 7e-15 seq2158 93.3 9e-14 >seq1409 Length=7126 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || |||| || || |||| ||| |||||||| || || ||||||||||| |||| Sbjct 695 ACCGCCTCGCAACCGCAGGACCAAATGCAACGTGCTCTCCTTCTGGATGTTGTAATCAGA 636 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||| ||||| ||||| || ||||| || |||||||| | ||| || ||||| || Sbjct 635 CAGCGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGCTGCTGGTCTGGTGG 576 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| |||||||| |||||||||| || ||| | || || ||||| | ||| || Sbjct 575 GATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTCTAC 516 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| || || ||||| | ||||| ||||| |||||||| Sbjct 515 CTCCAGCGTGATGGTTTTGCCCGTAAGTGTCTTGACGAAGATCTGCAT 468 Score = 140 bits (154), Expect = 7e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || || || || | || ||| ||||| ||||||||||| | Sbjct 466 CCTCCACGCAGACGCAGGACAAGGTGGAGAGTTGATTCCTTTTGAATGTTGTAGTCGGAC 407 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| | ||| ||||| || ||||| || || ||||| | |||||| ||||| ||| Sbjct 406 AGCGTCCTGCCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCTGGCGGG 347 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || ||||| |||||||| | || ||| | ||||| ||||| | |||||| Sbjct 346 ATGCCTTCTTTGTCCTGGATCTTGGTCTTCACGTTGTCGATGGTGTCGCTGGATTCGACC 287 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 || |||||||| ||||| || |||| ||| || |||| Sbjct 286 TCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCACGA 250 Score = 122 bits (134), Expect = 2e-22 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || || || | ||| || || |||||||| ||||| | Sbjct 171 CCACCACGGAGACGAAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAC 112 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| ||||| ||||| |||||||| || || ||||||| || || ||||| || Sbjct 111 AGCGTCCGGCCGTCCTCGAGTTGTTTTCCTGCGAAGATCAGGCGCTGCTGGTCTGGTGGG 52 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC 283039 || |||||||||||||||||||| | || ||| | ||||| ||||| Sbjct 51 ATGCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATGGTGTC 5 >seq2769 Length=18169 Score = 96.9 bits (106), Expect = 7e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | ||| || || || ||||||||||||| Sbjct 11235 ACCACCACGGAGACGGAGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGA 11176 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || || ||||| || ||||| || || ||||||| ||| || ||||| || Sbjct 11175 AAGAGTACGCCCGTCCTCGAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGGGGG 11116 Query 282992 AATACCCTCCTTGTCT 283007 ||| |||||||||||| Sbjct 11115 AATTCCCTCCTTGTCT 11100 >seq2158 Length=8959 Score = 93.3 bits (102), Expect = 9e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 ||| |||||||||||||| | |||||| | || || || || ||||| || ||| | || Sbjct 2007 CTTCTCGGCATGAATGCTAAGCTCATGTGTCAGTACATTGAGTTCGTCGCCGATAGGCTT 1948 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 |||| || || || | |||| | || ||| | | |||||||||| |||||||| Sbjct 1947 CTCGTTGCTCTTGGTAATAAGAAGTTCTACAACACAACCAACCCCTTCGACTTTATGGAC 1888 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCA 230398 || || || || || || ||||||||||| |||||||| | ||||| || Sbjct 1887 AATATCTCCCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGAGATTACCA 1832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046695143728390