Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq789 304 1e-77 seq2954 206 3e-48 seq639 188 7e-43 seq762 150 2e-31 seq1110 140 3e-28 >seq789 Length=216 Score = 304 bits (336), Expect = 1e-77 Identities = 194/211 (92%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 8380 GATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTC 8439 |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 6 GATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTC 65 Query 8440 CAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGT 8499 | |||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 66 CCGAGTAGCTGGGATTACAGGCGTGCACCACCACGCCTGGCTAATTTTTGTATTTTTAGT 125 Query 8500 AGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCC 8559 ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 126 AGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCT 185 Query 8560 ACCTGCCTCGGCCTCCCAAAGTGCTGGGATT 8590 || |||||||||||||||||||||||||| Sbjct 186 GCCCACCTCGGCCTCCCAAAGTGCTGGGATT 216 >seq2954 Length=299 Score = 206 bits (228), Expect = 3e-48 Identities = 138/153 (90%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| |||||| |||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 96 TCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCG 155 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 156 CCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCAT 215 Query 8464 AAGCCACCACGCCAAGCTAATTTTTGTATTTTT 8496 ||||||||||| ||||| ||||||||||| Sbjct 216 GTGCCACCACGCCCGGCTAA--TTTGTATTTTT 246 >seq639 Length=216 Score = 188 bits (208), Expect = 7e-43 Identities = 116/123 (94%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 8484 TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC 8543 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 216 TTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC 157 Query 8544 TGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCC 8603 ||||||| ||||||| || ||||||||||||||||||||||||||||||||| |||||| Sbjct 156 TGACCTC--GTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCC 99 Query 8604 ACC 8606 ||| Sbjct 98 ACC 96 Score = 127 bits (140), Expect = 2e-24 Identities = 81/87 (93%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 8530 TGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGAT 8589 ||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1 TGGTCTCGATCTCCTGACCT--TGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGAT 58 Query 8590 TACAGGCATGAGCCACCGCGCCTGGCC 8616 ||||||| ||||||||||| ||||||| Sbjct 59 TACAGGCGTGAGCCACCGCACCTGGCC 85 >seq762 Length=231 Score = 150 bits (166), Expect = 2e-31 Identities = 121/146 (83%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 8470 CCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGC 8529 ||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 231 CCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGC 172 Query 8530 TGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGAT 8589 |||||| ||||||||| |||| | |||| || |||| ||||||| | ||||||| Sbjct 171 TGGTCTTGAACTCCTGGGCTCAAGCAATCCTCCCACCTCAGCCTCCCGAGTAGCTGGGAC 112 Query 8590 TACAGGCATGAGCCACCGCGCCTGGC 8615 |||||||||| |||| | ||| ||| Sbjct 111 TACAGGCATGTGCCATCATGCCCGGC 86 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/129 (77%), Gaps = 9/129 (7%) Strand=Plus/Minus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| ||| |||||| || |||| ||||||||||| |||||||||||| |||||||| Sbjct 161 CTCCTGGGCTCAAGCAATCCTCCCACCTCAGCCTCCCGAGTAGCTGGGACTACAGGCATG 102 Query 8465 AGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCAC-CATGTTGG 8523 |||| || ||| |||||||||| |||| |||| | ||||| | | ||||| Sbjct 101 TGCCATCATGCCCGGCTAATTTTT---TTTT-----GAGACGGAGTTTCGCTCTTGTTGC 50 Query 8524 CCAGGCTGG 8532 ||||||||| Sbjct 49 CCAGGCTGG 41 Score = 82.4 bits (90), Expect = 8e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 8352 TGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCT 8406 |||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 55 TGTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTCACTGCAACCTCCGCCT 1 >seq1110 Length=7218 Score = 140 bits (154), Expect = 3e-28 Identities = 111/132 (84%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| ||| ||||| || |||| ||||||||||| ||||||||||| ||||||| Sbjct 7087 CTCCTGGGCTCAAGTGATCCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCC 7146 Query 8465 AGCCACCACGCCAAGCTAA-TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG 8523 ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||| | Sbjct 7147 CGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAG 7206 Query 8524 CCAGGCTGGTCT 8535 ||||| |||||| Sbjct 7207 CCAGGATGGTCT 7218 Score = 122 bits (134), Expect = 9e-23 Identities = 102/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 8491 ATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTC 8550 |||||| ||||||| ||||| |||| |||||| ||||||||||||| |||||||| ||| Sbjct 7038 ATTTTTTGTAGAGATAGGGTCTCACTATGTTGCCCAGGCTGGTCTCAAACTCCTGGGCTC 7097 Query 8551 ATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGC 8610 | ||||||| || |||| ||||||||| ||||||| ||||||| |||||| ||| Sbjct 7098 AAGTGATCCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCGCCACCACGC 7157 Query 8611 CTGGC 8615 | ||| Sbjct 7158 CCGGC 7162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521466586399000