Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1409 179 9e-40 seq2769 84.2 5e-11 >seq1409 Length=7126 Score = 179 bits (198), Expect = 9e-40 Identities = 159/199 (80%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 ||||||||||||| || || || || ||||| || ||||| ||| | |||||||||| Sbjct 250 TCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCATCG 309 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | ||||| || ||||| |||||||||||||| ||||| || ||||||||||| || | Sbjct 310 ACAACGTGAAGACCAAGATCCAGGACAAAGAAGGCATCCCGCCAGACCAGCAACGTCTCA 369 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||| |||||||||||||| || || ||||| || |||| || ||| | ||||| | Sbjct 370 TCTTCGCTGGAAAACAGCTCGAGGACGGCAGGACGCTGTCCGACTACAACATTCAAAAGG 429 Query 178111 AATCAACACTGCATCTTGT 178129 ||||||| || || ||||| Sbjct 430 AATCAACTCTCCACCTTGT 448 Score = 136 bits (150), Expect = 1e-26 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || ||||| ||||| || ||||| ||| | ||| Sbjct 471 CAGATCTTCGTCAAGACACTTACGGGCAAAACCATCACGCTGGAGGTAGAATCCAGCGAC 530 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||| |||||||| ||||| ||||| || |||||||| Sbjct 531 ACGATAGACAACGTCAAGACAAAGATCCAGGACAAGGAAGGTATCCCACCAGACCAGCAG 590 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || |||||||||||||| || || |||| || | ||||| ||| || Sbjct 591 CGTCTCATCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACGCTGTCTGATTACAACATC 650 Query 178104 CAAAAAGA 178111 || || || Sbjct 651 CAGAAGGA 658 Score = 116 bits (128), Expect = 9e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| |||||||| ||||| || ||||| || || ||||| || |||||| Sbjct 5 GACACCATCGACAACGTCAAGACCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAG 64 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || |||||||| |||||||| ||||| || || |||| || |||| |||||| Sbjct 65 CAGCGCCTGATCTTCGCAGGAAAACAACTCGAGGACGGCCGGACGCTGTCCGACTATAAC 124 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 125 ATCCAGAAGGAGTCCACCCTTCACCTCGT 153 >seq2769 Length=18169 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || ||||| || || |||||||| || || |||||||| |||||||||||||| Sbjct 11101 GACAAGGAGGGAATTCCCCCAGACCAGCAGCGTCTGATCTTCGCAGGAAAACAGCTCGAG 11160 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || || | |||||| | || || ||| | || || || || || || || || || Sbjct 11161 GACGGGCGTACTCTTTCTGACTACAACATTCAGAAGGAGTCCACCCTTCACCTCGT 11216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203680536082290