Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1409 140 3e-28 seq2769 114 1e-20 >seq1409 Length=7126 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || | || | |||| ||||| ||||||||||||||| ||||| || || || Sbjct 694 CCGCCTCGCAACCGCAGGACCAAATGCAACGTGCTCTCCTTCTGGATGTTGTAATCAGAC 635 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| |||||||| || || || || || || ||||| ||||| | || Sbjct 634 AGCGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGCTGCTGGTCTGGTGGG 575 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| ||| ||| ||| | | | |||||||| || || || Sbjct 574 ATACCTTCCTTGTCCTGGATCTTTGTCTT-GACGTTGTCTATCGTGTCGCTGGATTCTAC 516 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| ||| || ||||| ||||| || ||||| ||||| ||||||||| Sbjct 515 CTCCAGCGTGATGGTTTTGCCCGTAAGTGTCTTGACGAAGATCTGCATG 467 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || ||| ||||||||| |||||||||||||| Sbjct 172 GCCACCACGGAGACGAAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGA 113 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| ||||| || || || ||||| ||||||||||| ||||| | || Sbjct 112 CAGCGTCCGGCCGTCCTCGAGTTGTTTTCCTGCGAAGATCAGGCGCTGCTGGTCTGGTGG 53 Query 41755 AACGCTCTCCTTGTC 41769 | || ||||||||| Sbjct 52 GATGCCCTCCTTGTC 38 >seq2769 Length=18169 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || ||||| | ||| || || || ||| ||||||||||||||| ||||| Sbjct 11238 ACCACCACCACGGAGACGGAGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTC 11179 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || || ||| |||| |||||||| || || ||||| ||||| ||||| ||||| | Sbjct 11178 AGAAAGAGTACGCCCGTCCTCGAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGG 11119 Query 41752 GGGAACGCTCTCCTTGTCCAT 41772 ||||| | ||||||||| || Sbjct 11118 GGGAATTCCCTCCTTGTCTAT 11098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462285016642000