Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq109 125 2e-23 >seq109 Length=59048 Score = 125 bits (138), Expect = 2e-23 Identities = 179/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 ||||| || |||||||| | ||| |||||||| | || || | || ||| | Sbjct 41744 ATCATCACTGAAGCAGTCACCATCGAGCAGGAGTTCTTGACCGATGCCCTCCCCTGTGCC 41803 Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 ||| | |||||||| ||| | || ||| | |||||||| || ||||| ||||| | || Sbjct 41804 CTTCTCGGCATGAATGCTAAGCTCATGTGCCAGTACATTGAGTTCGTCGCCGATAGGCTT 41863 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | ||||| |||||| || |||| | |||||| | | |||||||| | || ||||| Sbjct 41864 CTCGTTGCTCTTGGTAACAAGAAGTTCTACAACACCACCAACCCCTTCGACTTCATGGAC 41923 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGG 230625 || || || || ||||||||||||||||| |||||||| | || || |||| Sbjct 41924 AATATCTCCCTCGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGAGATTACCAGAAA 41983 Query 230626 CCTGGTGTGATG 230637 ||||||| ||| Sbjct 41984 GCTGGTGTCATG 41995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057818849719400