Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq96 201 1e-46 seq109 102 1e-16 >seq96 Length=72333 Score = 201 bits (222), Expect = 1e-46 Identities = 590/904 (65%), Gaps = 4/904 (0%) Strand=Plus/Minus Query 53942 TACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 54001 |||||| || ||||| ||||| | |||| ||||||||||| |||| || || Sbjct 48709 TACAATGCCTCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCAG 48650 Query 54002 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 54061 | | | ||| || || | | | ||||| ||||| || | ||||||| |||| | Sbjct 48649 AATAGGGTCCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAG 48590 Query 54062 GCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 54121 || | |||||||| | || | ||| || ||||| ||||| || || ||| Sbjct 48589 GCCAAGAATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGG 48530 Query 54122 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTG 54181 ||| | | ||||||| ||||| || |||| ||| || | | | || || || ||| Sbjct 48529 AACTCAAAGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTG 48470 Query 54182 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 54241 || || ||||| || | ||||| || ||||| || | || | | ||| || | || Sbjct 48469 TTGCCACCCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATT 48410 Query 54242 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATT 54301 || ||||| | || ||||| || | || ||| ||| ||||||| ||| | Sbjct 48409 CCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACG 48350 Query 54302 GATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 54361 ||||| || || || || | || || || || || || || | || || ||| Sbjct 48349 TTAAGACCGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAG 48290 Query 54362 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 54421 || || || ||||| || ||| |||||| || || || ||| || |||||| | | Sbjct 48289 ATACCTTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGC 48230 Query 54422 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 54481 ||||| ||||| || | || ||||| || || || || |||| | || | ||| Sbjct 48229 GGGGTTCCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGA 48170 Query 54482 TTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCAT 54540 ||||| || || || || || | ||| || | || || || || || || ||||| Sbjct 48169 TTGTATGTTTCAATTACTTTCTCAACGTCCTCACCG-TGGATACCGACGGCAACTCGCAT 48111 Query 54541 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTC 54600 || ||| ||||| || | |||| | | |||| ||| || |||| ||| || |||| Sbjct 48110 TATCATATGCTGTGGCCGTTCAGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTC 48051 Query 54601 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660 | || || || || ||||| | ||| |||||| || ||||| | |||| | ||||| Sbjct 48050 AAGCGTCTTGAAGCCGAAATACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTT 47991 Query 54661 GAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATG 54720 ||||| || || ||| | || | ||| || | || || || |||| | Sbjct 47990 GAGTTCTTCAGCATGTTTCATGACGATCTCCCGAGTCTTCTCGGATATCATGGGAGCTGG 47931 Query 54721 TTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTA-AATAGtt 54779 || || ||||| || || |||| | | | || | || || || | ||| | | Sbjct 47930 CCGGCCGTTCTTAGGGTTAACGTAGTGATAGAGGTCATCTATAAC-GGACGAGAATTGCT 47872 Query 54780 tttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCG 54839 | || |||| |||||| || || || || |||||||| || || ||||||||||| || | Sbjct 47871 TCTTGGTTTGTTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTG 47812 Query 54840 GATG 54843 |||| Sbjct 47811 GATG 47808 >seq109 Length=59048 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || ||||| |||||| || ||||| | || | ||||||||| || |||||| Sbjct 41691 CAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGT 41632 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| || |||||||| || ||||| || ||||| || || || || |||||| Sbjct 41631 CCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAA 41572 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAG 24283 || || || || || |||||||||| ||| Sbjct 41571 ATACCCTCGACGGCAGCAAAGGCAACAAG 41543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718779822400