Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq109 154 2e-32 seq13 134 1e-26 >seq109 Length=59048 Score = 154 bits (170), Expect = 2e-32 Identities = 310/452 (69%), Gaps = 6/452 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| | || |||||| | | | || | |||| |||||| Sbjct 41484 AGAAGGCCGATTGGGCCATTCGATGGATCCAAGATAAGAATTCCACATTCGCACAGCGCC 41543 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || ||||| || ||||||||||| | ||||| ||| |||||| |||| || | Sbjct 41544 TTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCATCTTCT 41603 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| || || ||||||||||| || || ||| |||||| ||||||||| | | Sbjct 41604 GGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTCATCTCCCGTG 41663 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACC-G 117220 |||| || || || || |||||||| | |||||| || | | || || | Sbjct 41664 ACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTCTCACCTCAACTATCGTCCTG 41723 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 | | | | || || || ||| |||| || || ||| ||||||||||| ||| | Sbjct 41724 ACCCCAGTGC-TGTTGAGGCCATCATCACTGAAGCAGTCACCATCGAGCAGGAGTTCTTG 41782 Query 117281 ACCGAAGCGCT-GCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACA 117338 ||||| || || || |||| || || || | || ||| || | |||| || |||| Sbjct 41783 ACCGATGCCCTCCCCTGTGC-CCTTCTCGGCATGAA-TGCTAAGCTCATGTGCCAGTACA 41840 Query 117339 TCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGC 117398 | |||||||||||||| ||||| || | | || | | ||| ||||||||| Sbjct 41841 TTGAGTTCGTCGCCGATAGGCTTCTCGTTGCTCTTGGTAACAAGAAGTTCTACAACACCA 41900 Query 117399 CCAACCCGCTGGACTTTATGAACCTCATCTCC 117430 ||||||| | ||||| ||| || |||||| Sbjct 41901 CCAACCCCTTCGACTTCATGGACAATATCTCC 41932 Score = 136 bits (150), Expect = 4e-27 Identities = 201/284 (71%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || || || || || |||||||| | ||| ||| | ||||| Sbjct 41078 ATCTGGCAAATGTACAAGAAAGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTC 41137 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752 || ||||| | ||||||| | | | || ||| | || || |||||| Sbjct 41138 TCTAAGGATATTCACGACTGGAACAACAGGCTCAATGACGATGAACGATTCTTCATCTCC 41197 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| ||||||| ||||||||| || |||||||| |||||||| || | || ||| Sbjct 41198 CACGTCTTGGCCTTCTTCGCCGCCTCAGATGGCATCGTTAACGAGAACCTCCTTGAACGT 41257 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | || || ||||| | || || || |||||||| ||||| |||||| ||| Sbjct 41258 TTCAGCAACGAAGTCCAGGTACCGGAAGCTCGATGCTTCTATGGCTTCCAGATCATGATG 41317 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 ||||| | ||||| |||| || || |||||||||||| || Sbjct 41318 GAGAATATTCACTCCGAAACATACTCTCTCCTCATCGACACCTA 41361 >seq13 Length=341173 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||||||||| ||||| | || || ||| ||| | Sbjct 272870 ATGCAGATCTTCGTCAAGACACTGACGGGCAAAACTATCACTCTGGAAGTAGAATCCAGC 272811 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| ||| || | ||||| || || || || | ||||| Sbjct 272810 GACACGATAGACAACG-TCAAGACAAAGATCCAGGACAAGGAAGGTATTCCGCCAGACCA 272752 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || || |||||||| || |||| || || || ||| || || Sbjct 272751 GCAGCGTCTCATCTTTGCTGGAAAACAGCTTGAGGACGGCCGGACGCTGTCCGATTATAA 272692 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| | ||| |||| ||| | ||||| Sbjct 272691 CATCCAGAAGGAGAGCACGTTGCATTTGGTGCTGCGGTTGCGAGGCGG 272644 Score = 134 bits (148), Expect = 1e-26 Identities = 153/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG 40756 || |||| ||||| || || ||||| |||||||| | || |||||| ||| ||||| | Sbjct 273091 TAGTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCA 273032 Query 40757 TGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815 | | |||| ||||| || || | ||||| ||||||||||| | ||||||||||| Sbjct 273031 TCGACAACG-TCAAGACCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAGCAACGT 272973 Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 ||||||| || || |||||||| || |||| || |||||| |||||||||||||| Sbjct 272972 CTCATCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCAA 272913 Query 40876 AAGGAGGCCACGCTGCATCTAGT 40898 ||||| | || || || || || Sbjct 272912 AAGGAATCAACTCTCCACCTTGT 272890 Score = 129 bits (142), Expect = 6e-25 Identities = 143/188 (76%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| || |||||| |||| || || ||| ||||| | | |||| ||||| Sbjct 273374 TCACCGGCAAGACTATCACCCTCGAGGTGGAGTCCAGCGACACTATTGACAACG-TCAAG 273316 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| |||||||||||| | |||||||| || || |||| || || Sbjct 273315 ACCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCCTGATCTTTGCAGGA 273256 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 |||||||| || |||| ||||||||| |||||||||||||||||||||| ||| || Sbjct 273255 AAACAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGAGCACCCTC 273196 Query 40891 CATCTAGT 40898 || || || Sbjct 273195 CACCTCGT 273188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216752708800