Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq13 114 1e-20 seq5 87.8 2e-12 >seq13 Length=341173 Score = 114 bits (126), Expect = 1e-20 Identities = 144/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || || ||||| |||||||| || | || || ||||||||||| Sbjct 272895 GTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCCGAGAGGGTCCGGCCGTCCTCGAGCTG 272954 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTT 118653 |||||| || |||||||||| ||||| || ||||| ||||||||||||| ||| | | Sbjct 272955 TTTTCCTGCAAAGATGAGACGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGA--TC 273012 Query 118654 TTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCG 118712 || || || || | |||| |||||| || |||||||| | || | || |||||| Sbjct 273013 TTGGTCTTGACGTTGTCGATGGTGTCGCTGGATTCGACCTCAAGAGTGATGGTCTTGCCG 273072 Query 118713 GTCAGAGTTTTTAC 118726 ||||||||||| || Sbjct 273073 GTCAGAGTTTTCAC 273086 Score = 107 bits (118), Expect = 2e-18 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || || | || |||||| || | || ||| || || ||||| |||||| Sbjct 272642 TACCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAATCGG 272701 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||||| |||||||||||||| |||||||||||||||| || || | Sbjct 272702 ACAGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGCG 272761 Query 118630 GTATGCCCTCCTTGT-CTGTAATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTC 118687 | || || ||||||| ||| | | ||||| || || | || | ||||| || || Sbjct 272762 GAATACCTTCCTTGTCCTGGA--TCTTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTC 272819 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || | || | |||||||| ||||| || || || || ||||||||| || Sbjct 272820 TACTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCATGCCT 272874 Score = 89.7 bits (98), Expect = 4e-13 Identities = 124/170 (73%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| ||| | ||||| ||||||||||||||||| || | Sbjct 273205 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGTTTTCCTGCAAA 273264 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTGT-TTAACC 118664 ||| || |||||||| || || || ||||||||||||| ||| | | || || || || Sbjct 273265 GATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGA--TCTTGGTCTTGACG 273322 Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 | || | ||||| || ||| ||||||| ||| | || |||||||| Sbjct 273323 TTGTCAATAGTGTCGCTGGACTCCACCTCGAGGGTGATAGTCTTGCCGGT 273372 >seq5 Length=454596 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| || |||||||| ||||| | ||| || ||||| Sbjct 18779 CACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGAAAGAGTACGGCCGTCCTC 18720 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 ||||||||||| ||| |||| ||||||||||| || || || || |||||||||||| Sbjct 18719 AAGCTGTTTTCCTGCGAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCT 18662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828390822960