Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq13 134 9e-27 >seq13 Length=341173 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| |||| || |||||||| || || || || || ||||| ||||| || |||||| Sbjct 272644 CCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAATCGGAC 272703 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| || | ||| || || || || ||||| ||||||||||| || Sbjct 272704 AGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGA 272763 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| |||||| ||| | | | |||||| ||| | ||||| || Sbjct 272764 ATACCTTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTCTACT 272823 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| |||||||| || || || || || ||||||||||| Sbjct 272824 TCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCAT 272870 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || ||||| | ||| ||| || || ||||||||||| || Sbjct 272872 CCTCCACGCAGACGAAGGACAAGGTGGAGAGTTGATTCCTTTTGGATGTTGTAGTCCGAG 272931 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||| || ||||| || ||||| || |||||||| || Sbjct 272932 AGGGTCCGGCCGTCCTCGAGCTGTTTTCCTGCAAAGATGAGACGTTGCTGGTCTGGAGGG 272991 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | ||| | |||||||| Sbjct 272992 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTCGCTGGATTCGACC 273051 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 || | |||||||| |||||||| ||||||||||| Sbjct 273052 TCAAGAGTGATGGTCTTGCCGGTCAGAGTTTTCAC 273086 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | || || || ||||| |||||||||||||| || ||| |||| Sbjct 273185 AGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 273244 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || ||||| || || || ||||||||||| ||| | || ||||||||| Sbjct 273245 TCGAGCTGTTTTCCTGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 273304 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | ||| | || || || || | ||||| || Sbjct 273305 TGGATCTTGGTCTTGACGTTGTCAATAGTGTCGCTGGACTCCACCTCGAGGGTGATAGTC 273364 Query 34358 TTGCCGGTGA 34367 |||||||||| Sbjct 273365 TTGCCGGTGA 273374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070503772800