Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq96 215 5e-51 seq109 143 2e-29 seq13 113 4e-20 >seq96 Length=72333 Score = 215 bits (238), Expect = 5e-51 Identities = 434/641 (68%), Gaps = 6/641 (1%) Strand=Plus/Minus Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 |||||||| || |||| || | ||| || |||| | || |||| || || ||||| Sbjct 48628 TTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAGGCCAAGAATAGATCACGGGCA 48569 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458 || || || || || || |||||| | || | || || || | || || ||| Sbjct 48568 CGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAAAGATATCAGCGTGC 48509 Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAA 23518 || ||||| ||||| | ||||| || || || | ||| ||||| ||||| ||||| || Sbjct 48508 CATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGACATAT 48449 Query 23519 CGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG 23578 | ||| ||||||||| |||| | ||||| || |||| |||||||| | |||| Sbjct 48448 CTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGGAGGAGCCGTTGGTT 48389 Query 23579 CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCC 23638 || || | || || | || || | ||| |||| | ||| || ||||| | Sbjct 48388 CCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGACCGATTCCTCCAGCA 48329 Query 23639 GATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCT 23698 | || || |||| || || ||||| ||||||||||| || ||||| |||||||| Sbjct 48328 GTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTTCGATACTGTCCTCC 48269 Query 23699 TTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGT 23758 || | | | | ||| || |||| |||||||| | || || |||| ||| || Sbjct 48268 TTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCGGCATTGAAGAGA 48209 Query 23759 GTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCA 23818 || || ||| || || |||||| | ||||| |||||||| || || || | Sbjct 48208 GTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATGTTTCAATTACTTTC 48149 Query 23819 TCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTC--TC- 23875 |||| |||||| ||||| ||||||| ||| || ||||| ||||| | || || | || Sbjct 48148 TCAACGTCCTCACCGTGGATACCGACGGCAACTCGCATTATCATATGCTGTGGCCGTTCA 48089 Query 23876 TCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAA 23935 | ||| | |||||| || | ||| ||||| | || | ||| || || || ||| Sbjct 48088 GCAACCTT---GCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTCTTGAAGCCGAAA 48032 Query 23936 TAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 || | |||||||||||||| |||| ||| || ||||| || Sbjct 48031 TACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTT 47991 Score = 154 bits (170), Expect = 1e-32 Identities = 434/655 (66%), Gaps = 15/655 (2%) Strand=Plus/Minus Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202 |||| || ||||| |||||||| ||||| ||||| | |||||| | || || || Sbjct 49885 TGGTACGGAGATAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATAC 49826 Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262 || | ||||| | ||| | || || | |||| || ||| ||| || | Sbjct 49825 TGGTGATCTTTCCCATGGTAGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAA 49766 Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAAT-GTACGCATCGACATTTCCCATACG 22321 | || || |||||||| |||||||| | | |||| ||||| || |||||||| ||| Sbjct 49765 TGAAGGCGCCTCGATCAGCGGCCATCTGAA-CAATAGTACGTTGAGAAATTTCCCACACG 49707 Query 22322 GTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTA 22381 ||||||||||| | |||| ||| || || ||| | |||| ||| || Sbjct 49706 GTCTTGTACAGAGCCTTGATGTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCG 49647 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441 | | ||||| ||||| || | ||| ||||| |||| | || || |||||| Sbjct 49646 TCGGCGATGATACGGTTTTTCATATTGTCGGACCACAGGCCGAGGTCGACCAGGTCTTTG 49587 Query 22442 ACCAG--ATGACGGTTCACCACTTGAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATG 22498 | || ||| |||| || ||||| |||||||| | |||| || |||||| ||| ||| Sbjct 49586 AGAAGCCATG--GGTTGACAACTTGGAACTCGCCAG-CAAGTACACGGCGTGAGTAGATG 49530 Query 22499 TTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTC 22558 ||||| ||| | ||||| || | || ||| || || |||||| ||| || || Sbjct 49529 TTGGAGGTGTAAGGTTCAAAGCACTCGTTGAAGCCAAGAATCTGACTGGTGCTGGCAGTT 49470 Query 22559 GGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTA-CTCT-TGA 22616 ||||| ||||| | |||| ||| | | |||||||| || || | | || | || Sbjct 49469 GGCATGGGCGCAAGTAGTAAACTGTTACGGACACCGTGCTTGGAGATCTCAGCTTTAAGA 49410 Query 22617 GCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACA 22676 |||| ||||||||| || |||| |||||| || || ||||||||||||||| | | Sbjct 49409 CCATC--CCAGTCCCAGAGGTCGGTCGGCGTTAC---GTTCCACATATCGTATTGAAGGA 49355 Query 22677 CGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTT 22736 || || | || || ||||| | ||| ||||||| | | |||||||| Sbjct 49354 TACCCTGAGAAACAGGAGAACCCTCGTAGGAGGAGTATGGACCATCGACCTTGGCAAGTT 49295 Query 22737 CGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAA 22791 | || || |||||| | | || | ||||||||||||| ||||||| Sbjct 49294 CACACGATGCGGTCAACGCAGCATGGTAAAGGGTCTCGAAGATTTGGGTGTTCAA 49240 >seq109 Length=59048 Score = 143 bits (158), Expect = 2e-29 Identities = 335/500 (67%), Gaps = 14/500 (3%) Strand=Plus/Plus Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017 |||| ||||| || | || | || || || |||||||| ||||| ||||| ||| Sbjct 41526 CCACATTCGCACAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCT 41585 Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077 ||| || | || || ||| ||||||| || || || |||||||| || || || || Sbjct 41586 CCTTCGCCTCCATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCA 41645 Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137 |||| | || || || ||||| || || || ||||||||||| ||||| ||| ||||| Sbjct 41646 ACGAACTCATCTCCCGTGACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTCTC 41705 Query 58138 ACATTGTCAATAAACC-GACGCGGGATCGCATCTT--GGACATTATCACCGAGGCGGTCG 58194 || | | || || ||| | | | | || || ||| ||||| || || ||| Sbjct 41706 ACCTCAACTATCGTCCTGACCCCAGTGC---TGTTGAGGCCATCATCACTGAAGCAGTCA 41762 Query 58195 CGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATG 58254 | ||||| | ||||| | ||||| ||||| || ||| | ||||| ||||| | Sbjct 41763 CCATCGAGCAGGAGTTCTTGACCGATGCCCTCCCCTGTGCCCTTCTCGGCATGAATGCTA 41822 Query 58255 ATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT----TTGCTCGAACTGATT 58310 | | |||| ||||||||||||| || ||||| || ||| |||||| | | Sbjct 41823 AGCTCATGTGCCAGTACATTGAGTTCGTCGCCGATAGGCTTCTCGTTGCTCTTGGTAA-- 41880 Query 58311 GGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370 ||| || |||||||| | || || || || || ||| | ||||| |||| Sbjct 41881 CAAGAAGTTC--TACAACACCACCAACCCCTTCGACTTCATGGACAATATCTCCCTCGCT 41938 Query 58371 GGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGC 58430 |||||||| ||||| ||||| || ||| | || || || ||| || || ||| | Sbjct 41939 GGCAAGACCAACTTCTTCGAGAAGCGTGTTGGAGATTACCAGAAAGCTGGTGTCATGGCC 41998 Query 58431 GGTAACAAGTTGGAGGACGA 58450 ||| |||| ||| || || Sbjct 41999 AGTACCAAGAAGGAAGAGGA 42018 Score = 105 bits (116), Expect = 6e-18 Identities = 203/295 (69%), Gaps = 7/295 (2%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| || || ||||| || || ||||| | |||||| | ||||| Sbjct 41078 ATCTGGCAAATGTACAAGAAAGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTC 41137 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 ||||||||| | ||| ||| | | ||||| || ||| || || || Sbjct 41138 TCTAAGGATATTCACGACTGGAACAACAGGCTCAATGACGATGAACGATTCTTCATCTCC 41197 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| ||||| || |||||||| || ||||| || ||||||||||| | | ||| | Sbjct 41198 CACGTCTTGGCCTTCTTCGCCGCCTCAGATGGCATCGTTAACGAGAACCTCCTTGAACG- 41256 Query 57747 TTTTCA-CAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 ||||| ||| ||||| || || |||| || ||||||| || || || || | | Sbjct 41257 -TTTCAGCAACGAAGTCCAGGTACCGGAAGCTCGATGCTTCTATGGCTTCCAGATCATGA 41315 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 | || || | || || |||| || || || |||||||| || || | ||||| Sbjct 41316 TGGAGAATATTCACTCCGAAACATACTCTCTCCTCATCGACACCTATATCAAGGA 41370 >seq13 Length=341173 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| |||||||| ||||| | || || ||| | Sbjct 272871 CATGCAGATCTTCGTCAAGACACTGACGGGCAAAACTATCACTCTGGAAGTAGAATCCAG 272812 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| | || | ||||| ||| ||| | |||||||||||| | ||||| |||| Sbjct 272811 CGACACGATAGACAACGTCAAGACAAAGA-TCCAGGACAAGGAAGGTATTCCGCCAGACC 272753 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || || ||||| |||||| | || ||| ||| || |||||||| Sbjct 272752 AGCAGCGTCTCATCTTTGCTGGAAAACAGCTTGAGGACGGCCGGACGCTGTCCGATTATA 272693 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||| || || || || | ||| |||| || | || | ||||||| Sbjct 272692 ACATCCAGAAGGAGAGCACGTTGCATTTGGTGCTGCGGTTGCGAGGCGGTA 272642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764282609600