Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq109 114 3e-20 seq96 89.7 1e-12 >seq109 Length=59048 Score = 114 bits (126), Expect = 3e-20 Identities = 289/433 (67%), Gaps = 25/433 (6%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||||||||||||||| || || || || ||||| || || | ||||| ||||| |||| Sbjct 41544 TTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCATCTTCT 41603 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || | ||||| | ||| | |||| || ||||||| |||||| || |||| || | | Sbjct 41604 GGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTCATCTCCCGTG 41663 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGT----TGAAAAAGGGTTTTGTTGAT 102091 ||||||| || || || ||||| ||| | |||| | | | | || Sbjct 41664 ACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTCTCACCTCAACTATCGTCCTG 41723 Query 102092 ACCCCATCAAGAGAAAGGATTCTTGA---AATTGTCACTGAAGCCGTCCGAATTGAACAA 102148 ||||| || | |||| || |||||||||| ||| || || || Sbjct 41724 ACCCC----------AGTGCTGTTGAGGCCATCATCACTGAAGCAGTCACCATCGAGCAG 41773 Query 102149 GAATTTCTCACAGTTTCCCT-GCCTGTTAAATTAGTGGGAATGAACTGC-AAGTTGATGA 102206 || || | || | | |||| ||||| || | || ||||| ||| ||| | ||| Sbjct 41774 GAGTTCTTGACCGATGCCCTCCCCTGTGCCCTT-CTCGGCATGAA-TGCTAAGCTCATGT 41831 Query 102207 GCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCA 102264 ||||||||||||| || || || |||| || | |||| | || || || ||| Sbjct 41832 GCCAGTACATTGAGTTCGTCGCCGATAGGCTTCTCGTTGCTCTTGGTAACAAG--AAGTT 41889 Query 102265 CTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAA 102324 ||| || |||||||||||| |||||||||||||| ||||||| |||||||| Sbjct 41890 CTACAACACCACCAACCCCTTCGACTTCATGGACAATATCTCCCTCGCTGGCAAGACCAA 41949 Query 102325 CTTTTTTGAAAAG 102337 ||| || || ||| Sbjct 41950 CTTCTTCGAGAAG 41962 >seq96 Length=72333 Score = 89.7 bits (98), Expect = 1e-12 Identities = 175/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| ||||||||||||||| || || | || ||| || || || || ||||| Sbjct 48343 CCGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCT 48284 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTGT 94904 || || || || || | | | | | |||||||| || | | ||| || || | || Sbjct 48283 TCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGG-GT 48225 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 ||| ||| || || ||||| || |||||||| || || | | |||||||||| || Sbjct 48224 TCCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTA 48165 Query 94965 TGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 ||||||||| || | | ||| ||||| || ||||| || || ||||| ||||| Sbjct 48164 TGTTTCAATTACTTTCTCAACGTCCTCACCGTGGATACCGACGGCAACTCGCATTATCAT 48105 Query 95025 GTCCTGAGGGCGCTCA 95040 | ||| || || ||| Sbjct 48104 ATGCTGTGGCCGTTCA 48089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989579181962900