Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq96 201 1e-46 seq109 104 3e-17 >seq96 Length=72333 Score = 201 bits (222), Expect = 1e-46 Identities = 590/904 (65%), Gaps = 4/904 (0%) Strand=Plus/Minus Query 65973 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 66032 |||||| |||||||| ||||| | |||| ||||||||||| |||| || || Sbjct 48709 TACAATGCCTCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCAG 48650 Query 66033 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 66092 | | | ||| || || | | | ||||| ||||| || | ||||||| |||| | Sbjct 48649 AATAGGGTCCAATCGCCATTCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAG 48590 Query 66093 GCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 66152 || | |||| ||| | || | ||| || ||||| ||||| || || ||| Sbjct 48589 GCCAAGAATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGG 48530 Query 66153 AACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 66212 ||| | | |||||| ||||| || |||| ||| || || | | || || || ||| Sbjct 48529 AACTCAAAGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTG 48470 Query 66213 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 66272 || || ||||| || | ||||| || ||||| || | || | | ||| || | || Sbjct 48469 TTGCCACCCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATT 48410 Query 66273 CCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATT 66332 || ||||| | || ||||| || | || ||| ||| | ||||| ||| | Sbjct 48409 CCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACG 48350 Query 66333 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 66392 ||||| ||||| || || | || || || || || || || | || || ||| Sbjct 48349 TTAAGACCGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAG 48290 Query 66393 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 66452 || || || ||||| || ||| |||||| || || || ||| || |||||| | | Sbjct 48289 ATACCTTCGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGC 48230 Query 66453 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 66512 ||||| ||||| || | || ||||| || || || || |||| | || | ||| Sbjct 48229 GGGGTTCCGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGA 48170 Query 66513 TTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCAT 66571 ||||| || ||||| || || | ||| || | || || || || || || ||||| Sbjct 48169 TTGTATGTTTCAATTACTTTCTCAACGTCCTCACCG-TGGATACCGACGGCAACTCGCAT 48111 Query 66572 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 66631 || ||| ||||| || | |||| | | |||| ||| || | || ||| || |||| Sbjct 48110 TATCATATGCTGTGGCCGTTCAGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTC 48051 Query 66632 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 66691 | || || || || ||||| | ||| |||||| || ||||| | |||| ||||||| Sbjct 48050 AAGCGTCTTGAAGCCGAAATACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTT 47991 Query 66692 GAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATG 66751 ||||| || || ||| | || | ||| || | || || || |||| | Sbjct 47990 GAGTTCTTCAGCATGTTTCATGACGATCTCCCGAGTCTTCTCGGATATCATGGGAGCTGG 47931 Query 66752 TTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtt 66810 || || ||||| || || |||| | | || || || || || | ||| | | Sbjct 47930 CCGGCCGTTCTTAGGGTTAACGTAGTGATAGAGGTCATCTATAAC-GGACGAGAATTGCT 47872 Query 66811 tttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCG 66870 | || |||| |||||| || || || || |||||||| || || | ||||||||| || | Sbjct 47871 TCTTGGTTTGTTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTG 47812 Query 66871 GATG 66874 |||| Sbjct 47811 GATG 47808 Score = 87.8 bits (96), Expect = 2e-12 Identities = 196/291 (67%), Gaps = 5/291 (2%) Strand=Plus/Minus Query 64827 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 64886 |||| ||| | ||||||||| || ||||| || || | | ||||| ||||||||||| Sbjct 49925 TCCTGGTCTACTGTGAATTGGATTGGAGCAGACGCAGCCATGGTACGGAGATAGTACATG 49866 Query 64887 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAACT 64945 || || || |||||||| |||| || || |||||||| || | ||| || | Sbjct 49865 CCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATACTGGTGATCTTTCCCAT-GGT 49807 Query 64946 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 65005 || ||| | ||||| || | |||||| || || |||||||| || | || || Sbjct 49806 AGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAATGAAGGCGCCTCGATCAGC 49747 Query 65006 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 65065 ||||| | | || || ||| | ||||||||| | || || || | ||| || Sbjct 49746 GGCCATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGAGCCTTGAT 49687 Query 65066 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAAT 65113 ||| |||| | ||| | | || || ||||| ||||| || || || || Sbjct 49686 GTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCGTCGGCGATGAT 49636 >seq109 Length=59048 Score = 104 bits (114), Expect = 3e-17 Identities = 151/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || ||||| |||||| || ||||| | || | ||||||||| || |||||| Sbjct 41691 CAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGT 41632 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 |||||||| || |||||||| || ||||| || ||||| || || || || |||||| Sbjct 41631 CCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAA 41572 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA---CTGTCATGT 36334 || || || || || |||||||||| ||| | || | | | || | | || || Sbjct 41571 ATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAATGTGGAATTCTTATCTTGG 41512 Query 36335 ATCCA-CTTTTGAGCCCAATCGGCCTTCTT 36363 ||||| | || ||||||||||||||||| Sbjct 41511 ATCCATCGAATG-GCCCAATCGGCCTTCTT 41483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169673679200