Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq96 210 3e-49 seq109 104 3e-17 >seq96 Length=72333 Score = 210 bits (232), Expect = 3e-49 Identities = 589/897 (66%), Gaps = 8/897 (1%) Strand=Plus/Minus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 |||||||| ||||| | ||||| | ||||||||| || | ||| || | | | | Sbjct 48700 TCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCAGAATAGGGTC 48641 Query 79921 CACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 79978 || || |||| || ||| ||||| ||||| || | ||||||| |||| | || | | Sbjct 48640 CAATCGCCAT--TCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAGGCCAAGA 48583 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 80038 ||||||| | || | || || ||||| ||||| || || |||||| | | Sbjct 48582 ATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAA 48523 Query 80039 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTC 80098 ||||||| ||||| || |||| ||| || || | | || || || ||||| || | Sbjct 48522 AGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCAC 48463 Query 80099 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 80158 |||| || | ||||| || ||||| || | || | | ||| || | || || |||| Sbjct 48462 CCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGG 48403 Query 80159 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 80218 | | || ||||| || | || ||| ||| ||||||| ||| | |||| Sbjct 48402 AGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGAC 48343 Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278 | ||||| || || | || || || || || || || | || || ||||| || | Sbjct 48342 CGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTT 48283 Query 80279 CTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 80338 | || || || || |||||| || || || ||| || |||||| | | |||| Sbjct 48282 CGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTC 48223 Query 80339 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 80398 | ||||| || | || ||||| || || || || |||| | |||| |||||||| | Sbjct 48222 CGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATG 48163 Query 80399 TCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAACATG 80457 | ||||| || || | ||| || | || || || || || || ||||||| ||| Sbjct 48162 TTTCAATTACTTTCTCAACGTCCTCACCG-TGGATACCGACGGCAACTCGCATTATCATA 48104 Query 80458 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTT 80517 ||||| || | |||| | | |||| || || | || ||| || |||| | || Sbjct 48103 TGCTGTGGCCGTTCAGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTC 48044 Query 80518 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 80577 || || || ||||| | ||| |||||| || ||||| | |||| |||||||||||| Sbjct 48043 TTGAAGCCGAAATACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTTGAGTTCT 47984 Query 80578 TCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCA 80637 || || ||| | || | ||| || | || || || |||| | || Sbjct 47983 TCAGCATGTTTCATGACGATCTCCCGAGTCTTCTCGGATATCATGGGAGCTGGCCGGCCG 47924 Query 80638 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttGT 80696 || ||||| ||||| |||| | | || || || || || | ||| | || || || Sbjct 47923 TTCTTAGGGTTAACGTAGTGATAGAGGTCATCTATAAC-GGACGAGAATTGCTTCTTGGT 47865 Query 80697 TTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753 || ||||| || || || || |||||||| || || | ||||||||| |||||||| Sbjct 47864 TTGTTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTGGATG 47808 Score = 93.3 bits (102), Expect = 6e-14 Identities = 197/291 (68%), Gaps = 5/291 (2%) Strand=Plus/Minus Query 78706 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 78765 |||| ||| | ||||||||| || ||||| || || | | ||||| ||||||||||| Sbjct 49925 TCCTGGTCTACTGTGAATTGGATTGGAGCAGACGCAGCCATGGTACGGAGATAGTACATG 49866 Query 78766 CCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTA-GTTTGGAATAACT 78824 || || || |||||||| |||| || ||| |||||||| || | ||| || | Sbjct 49865 CCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATACTGGTGATCTTTCCCAT-GGT 49807 Query 78825 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 78884 || ||| | ||||| || | |||||| || || |||||||| || | || || Sbjct 49806 AGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAATGAAGGCGCCTCGATCAGC 49747 Query 78885 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 78944 ||||| | | || || ||| | ||||||||| | || || || | ||| || Sbjct 49746 GGCCATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGAGCCTTGAT 49687 Query 78945 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAAT 78992 ||| |||| | ||| | | || || ||||| ||||| || || || || Sbjct 49686 GTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCGTCGGCGATGAT 49636 >seq109 Length=59048 Score = 104 bits (114), Expect = 3e-17 Identities = 151/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || ||||| ||| || || ||||| | || ||||||||||| || |||||| Sbjct 41691 CAGGCAAAATCAGTGTGTAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAGGTGAGT 41632 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || |||||||| || ||||| || ||||| || || || || ||||| Sbjct 41631 CCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAGCCGCTGAAGAAA 41572 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGT 50136 || || || || || |||||||||||||| | || | | | ||| | || || Sbjct 41571 ATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAATGTGGAATTCTTATCTTGG 41512 Query 50137 ATCCA-CTTTTGAGCCCAATCGGCCTTCTT 50165 ||||| | || ||||||||||||||||| Sbjct 41511 ATCCATCGAATG-GCCCAATCGGCCTTCTT 41483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265388223200