Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq13 86.0 5e-12 >seq13 Length=341173 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||| | ||||||||||| || | || |||||||||| || || |||| || Sbjct 272661 CACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAATCGGACAGCGTCCGGCCGTCCTC 272720 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | ||||| || ||||| || | ||||| || || | ||| | |||||| || || Sbjct 272721 AAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGCGGAATACCTTCCTTGTCCTG 272780 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| ||||| || | | ||||||| | || || || | || |||||||| Sbjct 272781 GATCTTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTCTACTTCCAGAGTGATAGTTTT 272840 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || || || || || || ||||| Sbjct 272841 GCCCGTCAGTGTCTTGACGAAGATCTGCAT 272870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381367833782040