Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq96 228 1e-54 seq109 89.7 7e-13 >seq96 Length=72333 Score = 228 bits (252), Expect = 1e-54 Identities = 593/897 (66%), Gaps = 8/897 (1%) Strand=Plus/Minus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 |||||||| ||||| | ||| | ||||||||| ||||| || || | | | | Sbjct 48700 TCGAACTCTTCTCCGTAGACATCAGCCAATCCAGGAGCCTCATTAGGGCAGAATAGGGTC 48641 Query 72004 CACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 72061 || || |||| || ||| ||||| ||||| || | ||||||| |||| | || | | Sbjct 48640 CAATCGCCAT--TCTTTTCAACTCGCTTCATGAACAAATCAGGAGTCCACAAGGCCAAGA 48583 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121 ||||||| | || | || || ||||| ||||| || || |||||| | | Sbjct 48582 ATAGATCACGGGCACGGACTTCTTCCTTTCCATGGTTCTTGCGGAGGTCAAGGAACTCAA 48523 Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181 ||||||| ||||| || |||| ||| || || | | || || || ||||| || | Sbjct 48522 AGATATCAGCGTGCCATGGCTCCAGGTAGATAGCAAAGGCACCTGGACGCTTGTTGCCAC 48463 Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241 |||| || | ||||| || ||||| || | || | | ||| || | || || |||| Sbjct 48462 CCTGGTCGACATATCTGGCAGTGTTGTTGAACACACGAAGCATGGGGACGATTCCGTTGG 48403 Query 72242 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGAC 72301 | | || ||||| || | || ||| ||| ||||||| ||| | | |||| Sbjct 48402 AGGAGCCGTTGGTTCCAGCAATGTAGGATCCGGTGGCACGGATACGGTGGACGTTAAGAC 48343 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 | ||||| || || | || || || || || || || | || || ||||| || | Sbjct 48342 CGATTCCTCCAGCAGTCTTTGAAATCAAAGCACAGGTCTTCAGTGTGTCGTAGATACCTT 48283 Query 72362 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 72421 | ||||| || ||| |||||| || || || ||| || |||||| | | |||| Sbjct 48282 CGATACTGTCCTCCTTCATGTCAATGAGGAAGCAGGAAGCCATTTGCGGCTGCGGGGTTC 48223 Query 72422 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 72481 | ||||| || | || ||||| || || || || |||| | |||| |||||||| | Sbjct 48222 CGGCATTGAAGAGAGTGGGAGAGGCATGGGTGAAGTATTTCTGGGACATGAGATTGTATG 48163 Query 72482 TCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAACATA 72540 | ||||| || || | ||| || | || || || || || || ||||||| |||| Sbjct 48162 TTTCAATTACTTTCTCAACGTCCTCACCG-TGGATACCGACGGCAACTCGCATTATCATA 48104 Query 72541 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 72600 ||||| || | |||| | | |||| || || | || ||| || |||| | || Sbjct 48103 TGCTGTGGCCGTTCAGCAACCTTGCCGTTGGTTCGTAGCAGGTATGACCTTTCAAGCGTC 48044 Query 72601 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTA 72660 || || || ||||| | ||| |||||| || ||||| | |||| |||| ||||||| Sbjct 48043 TTGAAGCCGAAATACTGGTAGTTAAAGTCACGGTCGTACACAATAGCCGAGTTGAGTTCT 47984 Query 72661 TCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCA 72720 || || ||| | || || ||| || | || || || |||| | || Sbjct 47983 TCAGCATGTTTCATGACGATCTCCCGAGTCTTCTCGGATATCATGGGAGCTGGCCGGCCG 47924 Query 72721 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttGT 72779 || ||||| ||||| |||| | | || || || || || | ||| | || || || Sbjct 47923 TTCTTAGGGTTAACGTAGTGATAGAGGTCATCTATAACGG-ACGAGAATTGCTTCTTGGT 47865 Query 72780 TTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 || ||||| || || || || |||||||| || || ||||||||||| |||||||| Sbjct 47864 TTGTTTGTGGAGGTTCGACACTGCTATTCTTGCAGCAAGAATGGCATAGTCTGGATG 47808 Score = 87.8 bits (96), Expect = 2e-12 Identities = 203/303 (67%), Gaps = 5/303 (2%) Strand=Plus/Minus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | ||| || || || |||| || || || | ||||| |||||||||||| Sbjct 49925 TCCTGGTCTACTGTGAATTGGATTGGAGCAGACGCAGCCATGGTACGGAGATAGTACATG 49866 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAGCT 70907 || || || |||||||| |||| || || |||||||| || | ||| || | | Sbjct 49865 CCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATACTGGTGATCTTTCCCAT-GGT 49807 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 ||| || | ||| || || | || ||| || || |||||||| || | || || Sbjct 49806 AGGCTCTTTCAAGTGGATGTTGAGGGATTGAGACTGGTCAATGAAGGCGCCTCGATCAGC 49747 Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027 ||||| | | || || ||| | ||||||||| | || || || | ||| || Sbjct 49746 GGCCATCTGAACAATAGTACGTTGAGAAATTTCCCACACGGTCTTGTACAGAGCCTTGAT 49687 Query 71028 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTT 71084 ||| |||| | ||| | | || || ||||| ||||| || || || || | ||||| Sbjct 49686 GTCTGCTGGGATGTTAGAGATGTTTTGGATGGAACCACCGTCGGCGATGATACGGTTTTT 49627 Query 71085 GAT 71087 || Sbjct 49626 CAT 49624 Score = 84.2 bits (92), Expect = 3e-11 Identities = 131/186 (70%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 71697 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTC 71756 ||||| ||| |||| |||||||| || ||||||| | ||| |||| | ||||| Sbjct 49008 GGCAATAGAAGCCAAGTTACAAACTGCAACCTCATCTGGGGCGGTGTATTCAACGATTTC 48949 Query 71757 AGTGCAAAGATT---ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813 ||||||||| || ||||| ||| || || | || | |||||| |||||| ||| Sbjct 48948 AGTGCAAAGGTTTGAACTAC---GGATAGTACCAAGGTTCTTTTGATTGCTCTTTCGGTT 48892 Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873 || | |||||| ||||| ||||| || | ||||| || |||| | || | ||| || Sbjct 48891 GCAGGAATCCTTGTAAAGCATAAAGGGGTTTCCAGTCTCCGTCTGGGCCTCGAGAATGGC 48832 Query 71874 TTTCCA 71879 | ||| Sbjct 48831 GTACCA 48826 >seq109 Length=59048 Score = 89.7 bits (98), Expect = 7e-13 Identities = 123/169 (73%), Gaps = 5/169 (3%) Strand=Plus/Minus Query 42106 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGC 42165 ||||||||| || |||||||||||||| || |||||||| || ||||| || || || || Sbjct 41650 TTCGTTGGAGAAGGTGAGTCCGGGCATGAGACCACGCTTCTTCAGCCAGAAGATGGAGGC 41591 Query 42166 AAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 42225 || || || ||||| || || || || || |||||||||| ||| | || | | | Sbjct 41590 GAAGGAGCCGCTGAAGAAAATACCCTCGACGGCAGCAAAGGCAACAAGGCGCTGTGCGAA 41531 Query 42226 ACCGGCA---CTGTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTT 42270 || | | || || ||||| | || ||||||||||||||||| Sbjct 41530 TGTGGAATTCTTATCTTGGATCCATCGAATG-GCCCAATCGGCCTTCTT 41483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136012088800