Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq109 140 5e-28 >seq109 Length=59048 Score = 140 bits (154), Expect = 5e-28 Identities = 338/504 (67%), Gaps = 27/504 (5%) Strand=Plus/Plus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || || || ||||| | |||| ||||| |||||| | || | || || | | ||| Sbjct 41477 ATCCGCAAGAAGGCCGATTGGGCCATTCGATGGATCCAAGATAAGAATTCCACATTCGCA 41536 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | | || || || || || ||||| ||||| || ||||| || || || || Sbjct 41537 CAGCGCCTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCC 41596 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| ||||| |||||||| || |||||||||||||| || | ||||| | || Sbjct 41597 ATCTTCTGGCTGAAGAAGCGTGGTCTCATGCCCGGACTCACCTTCTCCAACGAACTCATC 41656 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCT-G 125597 || || ||||| ||||||||| ||| |||||| || ||||| || || || | || Sbjct 41657 TCCCGTGACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTCTCACCTCAACTAT 41716 Query 125598 CGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGG 125657 ||||| || |||| | || ||| ||||| | || || || || | Sbjct 41717 CGTCCTGA------CCCCAGTGCTGTTGAGGCCATCA------TCACTGAAGCAGTCACC 41764 Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGC-AA 125716 || || || ||||| | ||||| |||| || | | | |||||||| ||| || Sbjct 41765 ATCGAGCAGGAGTTCTTGACCGATGCCCTCCCCTGTGCCCTTCTCGGCATGAA-TGCTAA 41823 Query 125717 GCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC 125774 ||| |||||| ||||||| ||||| || || ||| | || || |||| |||| Sbjct 41824 GCTCATGTGCCAGTACATTGAGTTCGTCGCCGATAGGCTTCT-----CGTTGCTCTTGGT 41878 Query 125775 CGCAAGA---TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAG 125831 ||||| | |||||| ||| || ||||| || |||||| || || || || | Sbjct 41879 AACAAGAAGTTCTACAACACCACCAACCCCTTCGACTTCATGGACAATATCTCCCTCGCT 41938 Query 125832 GGTAAGACCAACTTTTTCGAGAAG 125855 || ||||||||||| ||||||||| Sbjct 41939 GGCAAGACCAACTTCTTCGAGAAG 41962 Score = 105 bits (116), Expect = 1e-17 Identities = 199/284 (70%), Gaps = 8/284 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| || ||| | || || || ||||| | ||||||| | || || Sbjct 41078 ATCTGGCAAATGTACAAGAAAGCTGAAGCTTCTTTCTGGACTGCCGAAGAGATTGACCTC 41137 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| | |||| ||| | | | | | ||| ||| ||| || || || Sbjct 41138 TCTAAGGATATTCACGACTGGAACAACAGGCTCAATGACGATGAACGATTCTTCATCTCC 41197 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| | ||||||||||| |||| ||| ||||| ||||| ||||| || || |||| ||| Sbjct 41198 CACGTCTTGGCCTTCTTCGCCGCCTCAGATGGCATCGTTAACGAGAACCTCCTTGA-ACG 41256 Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 ||| ||| | | ||| | || || | ||| ||||| || || ||||| ||||| Sbjct 41257 TTTC-AGCAA-CGAAGTCCAGGTACCGGAAG-CTCGATGCTTCTATGGCTTCCAGATCAT 41313 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACA 125298 ||| ||||| | ||||| |||| |||||| || || |||| Sbjct 41314 GATGGAGAATATTCACTCCGAAACATACTCTCTCCTCATCGACA 41357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055679968800