Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq13 105 4e-18 >seq13 Length=341173 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 |||||||| ||||||| |||||||||||| || ||| || || || || ||||| || Sbjct 272643 ACCGCCTCGCAACCGCAGCACCAAATGCAACGTGCTCTCCTTCTGGATGTTATAATCGGA 272702 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | | ||| || | || |||||| ||| || | ||| |||||||| | || Sbjct 272703 CAGCGTCCGGCCGTCCTCAAGCTGTTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGCGG 272762 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGT-TTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 || ||||| || || ||| ||| || || | | ||||||||| ||| || | Sbjct 272763 AATACCTTCCTTGTCCTGGATC-TTTGTCTTGACGTTGTCTATCGTGTCGCTGGATTCTA 272821 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 | |||||||| || ||||| ||||| || || || ||||| || |||||| Sbjct 272822 CTTCCAGAGTGATAGTTTTGCCCGTCAGTGTCTTGACGAAGATCTGCATG 272871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318776123661240