Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq61 138 2e-28 seq14 102 1e-17 >seq61 Length=123644 Score = 138 bits (152), Expect = 2e-28 Identities = 179/245 (73%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || || ||||||| |||| || || || |||||||| || ||||||||||| || || Sbjct 75044 GCCAAACGCCATCGCAAGATC-CTCCGCGACAACATCCACGGCATCACCAAGCCTGCCAT 75102 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || || |||||||| ||||||||| |||| | || |||| | |||| Sbjct 75103 CCGCCGTCTCGCCCGCCGTGGTGGTGTCAAGCGTATCTCCGCCATGATCTACGGCGAGAC 75162 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| || ||| |||| || || || ||| || || Sbjct 75163 CCGCAACGTGCTCAAGTCCTTCCTCGAGGGCGTCATCCGCGACGCCGTCACCTACACTGA 75222 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || ||||| |||||||| | || ||||||| || | || || || || Sbjct 75223 ACACGCCAAGCGCAAGACAGTCACCTCTCTCGACGTCGTCTACGCTCTCAAGCGCCAGGG 75282 Query 16672 CCGTA 16676 ||||| Sbjct 75283 CCGTA 75287 >seq14 Length=337529 Score = 102 bits (112), Expect = 1e-17 Identities = 84/100 (84%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | |||| || || || |||||||| || ||||||||||| || | Sbjct 192616 CGCCAAGCGTCACCGTAAGATC-CTCCGCGACAACATCCACGGCATCACCAAGCCCGCCA 192674 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 |||| ||||| |||||||||||||| ||||||||| |||| Sbjct 192675 TCCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTC 192714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074852563340