Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq13 127 2e-24 >seq13 Length=341173 Score = 127 bits (140), Expect = 2e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290 || |||||| | ||||| || || |||||||||| || ||| ||| ||| ||| | ||| Sbjct 273086 GTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCATCGAC 273027 Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350 | |||| || || || ||||||||||| || || || || || |||||||| || Sbjct 273026 AACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAGCAACGTCTCATC 272967 Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 ||||| || |||||| | ||||| ||| ||| |||| || |||||||| ||||| ||| Sbjct 272966 TTTGCAGGAAAACAGCTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCAAAAGGAA 272907 Query 22411 TCCAC 22415 || || Sbjct 272906 TCAAC 272902 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || ||||| ||| ||| || | ||| | |||| Sbjct 273372 ACCGGCAAGACTATCACCCTCGAGGTGGAGTCCAGCGACACTATTGACAACGTCAAGACC 273313 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || || || || || || || || ||||| || ||| Sbjct 273312 AAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCGCCTGATCTTTGCAGGAAAA 273253 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGA 22409 ||| | ||||| ||||||| ||||||| |||||||| || || || Sbjct 273252 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGA 273206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726056134700