Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq109 228 2e-54 seq96 113 9e-20 >seq109 Length=59048 Score = 228 bits (252), Expect = 2e-54 Identities = 327/449 (73%), Gaps = 19/449 (4%) Strand=Plus/Plus Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 || || |||||| | ||||||||||| || |||||| ||| ||||||||||||||||| Sbjct 41543 CTTGTTGCCTTTGCTGCCGTCGAGGGTATTTTCTTCAGCGGCTCCTTCGCCTCCATCTTC 41602 Query 42765 TGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 ||||| ||| || ||| || |||||||||||||||||||| |||||||||||| | | Sbjct 41603 TGGCTGAAGAAGCGTGGTCTC-ATGCCCGGACTCACCTTCTCCAACGAACTCATCTCCCG 41661 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA 42883 ||||| || || || | || ||||||||||| |||||||| ||||||| || | Sbjct 41662 TGACGAAGGCCTACACACTGATTTTGCCTGCCTTCTGTTCTC---TCACCTCA---ACTA 41715 Query 42884 --GCCCTCGAAGGAGCG-GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940 | ||| || | || |||||||||||| || || || |||||| |||| Sbjct 41716 TCGTCCTGACCCCAGTGCTGTTGAGGCCATCATCACTGAAGCAGTCACCATCGAGCAGGA 41775 Query 42941 GTTCCTCACGCAGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999 |||| | || | | || ||| ||| |||| |||||||||| | ||||||||| Sbjct 41776 GTTCTTGACCGATGCCCTCCCCTGTG-CCCTTCTCGGCATGAATGCTAAGCTCATGTGCC 41834 Query 43000 AGTACATCCAGTACGTCGCCGA---CCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCT 43056 ||||||| ||| ||||||||| | |||| | ||| | ||| || ||| Sbjct 41835 AGTACATTGAGTTCGTCGCCGATAGGCTTCTCGT-TGC--TCTTGGTAACAAGAAGTTCT 41891 Query 43057 ACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACT 43116 ||||||| | |||||||||||| ||||| || ||||| | | ||||||||||||| Sbjct 41892 ACAACACCACCAACCCCTTCGACTTCATGGACAATATCTCCCTCGCTGGCAAGACCAACT 41951 Query 43117 TTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 | ||||||||||| || | || |||||| Sbjct 41952 TCTTCGAGAAGCGTGTTGGAGATTACCAG 41980 >seq96 Length=72333 Score = 113 bits (124), Expect = 9e-20 Identities = 251/369 (68%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 245077 GTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGC 245136 |||||| | || || | || ||||||| || ||||||| ||||||| ||||| ||| Sbjct 48548 GTTCTTGCGGAGGTCAAGGAACTCAAAGATATCAGCGTGCCATGGCTCCAGGTAGATAGC 48489 Query 245137 GAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCG-AGCG-CGTTGAAG 245194 | ||| || || ||||||||||| |||||||| | ||| ||| | || | |||||| Sbjct 48488 AAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGA-CAT-ATCTGGCAGTGTTGTTGAAC 48431 Query 245195 ATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCC 245254 | || || | || || || ||||| ||| ||||||||| || ||||||| || Sbjct 48430 ACACGAAGCATGGGGACGATTCCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAGGATCCG 48371 Query 245255 TTGCCCCTGAGGTTGCTGATGGAC----ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAG 245310 || | | || | | | ||||| | || | ||| || || ||| || || | Sbjct 48370 GTGGCAC---GGATAC-GGTGGACGTTAAGACCGATTCCTCCAGCAGTCTTTGAAATCAA 48315 Query 245311 GGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAG 245370 || ||| |||| | ||||| || || || || |||||| |||||||| | || Sbjct 48314 AGCACAGGTCTTCAGTGTGTCGTAGATACCTTCGATACTGTCCTCCTTCATGTCAATGAG 48255 Query 245371 AAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTG 245430 |||||||| | || || |||| ||| | | | ||||| |||||||| ||| || Sbjct 48254 GAAGCAGGAAGCCATTTGCGGCTGCGGGGTTCCGGCATTGAAGAGAGTGGGAGAGGCATG 48195 Query 245431 GGTAAAGTA 245439 ||| ||||| Sbjct 48194 GGTGAAGTA 48186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944334714388800